@TOME V3
(Feb 2022)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : MAPK3_HUMAN: (2019-05-01 )
MDGETAEEQGGPVPPPVAPGGPGLGGAPGGRREPKKYAVTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNHPWINQSMVVPQTPLHTARVLQEDKDHWDEVKEEMTSALATMRVDYDQVKIKDLKTSNNRLLNKRRKKQAGSSSASQGCNNQ
Atome Classification :
(4 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
MDGETAEEQGGPVPPPVAPGGPGLGGAPGGRREP
K
K
Y
AVTD
D
Y
Q
L
S
K
Q
V
LGLGVN
G
K
V
L
E
C
F
H
R
RT
G
Q
K
C
A
L
K
L
L
YDSP
K
A
R
Q
E
V
D
H
HWQASGG
P
H
I
V
C
I
L
D
V
Y
ENMHHG
K
R
C
L
L
I
I
M
E
C
MEG
G
E
L
F
S
R
I
Q
E
RGDQA
F
T
E
R
E
A
A
E
I
M
R
D
I
G
T
A
I
Q
F
L
H
SHNIAHRDVKPEN
L
L
Y
TSKEK
D
A
V
L
K
LTDFGFA
K
E
T
T
Q
N
A
LQTPCYTPYYV
A
P
E
VL
G
P
E
K
YDKSCD
M
W
S
L
G
V
I
M
Y
I
L
L
CGFPPFYSNTGQAISP
G
M
K
R
R
I
RLGQYGFPNP
E
W
S
E
V
S
E
D
A
K
Q
L
I
R
L
L
LKTDPTE
R
L
T
I
T
Q
FMNHPWINQSMVVPQTP
L
H
T
A
R
V
L
Q
EDK
D
H
W
D
E
V
K
E
E
M
T
S
A
L
A
T
M
R
VDY
D
Q
V
K
I
K
D
LKTSN
N
R
L
L
N
K
R
R
K
K
QAGSSSASQGCNNQ
1
PsiBlast_PDB
68.57
100%
-112
- C1 -
-
3FHR
1
MAPK3_HUMAN
A:
[20-336]
--------------------------------
E
P
K
K
Y
A
V
T
D
D
Y
Q
L
S
K
Q
V
L
G
L
G
V
N
G
K
V
L
E
C
F
H
R
R
T
G
Q
K
C
A
L
K
L
L
Y
D
S
P
K
A
R
Q
E
V
D
H
H
W
Q
A
S
G
G
P
H
I
V
C
I
L
D
V
Y
E
N
M
H
H
G
K
R
C
L
L
I
I
M
E
C
M
E
G
G
E
L
F
S
R
I
Q
E
R
-
D
Q
A
F
T
E
R
E
A
A
E
I
M
R
D
I
G
T
A
I
Q
F
L
H
S
H
N
I
A
H
R
D
V
K
P
E
N
L
L
Y
T
S
K
E
K
D
A
V
L
K
L
T
D
F
G
F
A
K
E
T
----------------------
E
K
Y
D
K
S
C
D
M
W
S
L
G
V
I
M
Y
I
L
L
C
G
F
P
P
F
---------------------
G
F
P
N
P
E
W
S
E
V
S
E
D
A
K
Q
L
I
R
L
L
L
K
T
D
P
T
E
R
L
T
I
T
Q
F
M
N
H
P
W
I
N
Q
S
M
V
V
P
Q
T
P
L
H
T
A
R
V
L
Q
E
D
K
D
H
W
D
E
V
K
E
E
M
T
S
A
L
A
T
M
R
V
D
Y
D
Q
V
---------------------------------
3
PsiBlast_PDB
67.71
100%
-105
- C1 -
-
3R1N
1
MAPK3_HUMAN
A:
[1-316]
--------------------------------
E
P
K
K
Y
A
V
T
D
D
Y
Q
L
S
K
Q
V
L
G
L
G
V
N
G
K
V
L
E
C
F
H
R
R
T
G
Q
K
C
A
L
K
L
L
Y
D
S
P
K
A
R
Q
E
V
D
H
H
W
Q
A
S
G
G
P
H
I
V
C
I
L
D
V
Y
E
N
M
H
H
G
K
R
C
L
L
I
I
M
E
C
M
E
G
G
E
L
F
S
R
I
Q
E
R
G
--
A
F
T
E
R
E
A
A
E
I
M
R
D
I
G
T
A
I
Q
F
L
H
S
H
N
I
A
H
R
D
V
K
P
E
N
L
L
Y
T
S
K
E
K
D
A
V
L
K
L
T
D
F
G
F
A
K
E
T
T
--------------------
P
E
K
Y
D
K
S
C
D
M
W
S
L
G
V
I
M
Y
I
L
L
C
G
F
P
P
F
Y
--------------------
G
F
P
N
P
E
W
S
E
V
S
E
D
A
K
Q
L
I
R
L
L
L
K
T
D
P
T
E
R
L
T
I
T
Q
F
M
N
H
P
W
I
N
Q
S
M
V
V
P
Q
T
P
L
H
T
A
R
V
L
Q
E
D
K
D
H
W
D
E
V
K
E
E
M
T
S
A
L
A
T
M
R
V
D
Y
D
Q
----------------------------------
4
PsiBlast_PDB
66.13
100%
-113
- C1 -
-
3SHE
1
MAPK3_HUMAN
A:
[1-316]
--------------------------------
E
P
K
K
Y
A
V
T
D
D
Y
Q
L
S
K
Q
V
L
G
L
G
V
N
G
K
V
L
E
C
F
H
R
R
T
G
Q
K
C
A
L
K
L
L
Y
D
S
P
K
A
R
Q
E
V
D
H
H
W
Q
A
S
G
G
P
H
I
V
C
I
L
D
V
Y
E
N
M
H
H
G
K
R
C
L
L
I
I
M
E
C
M
E
G
G
E
L
F
S
R
I
Q
E
----
A
F
T
E
R
E
A
A
E
I
M
R
D
I
G
T
A
I
Q
F
L
H
S
H
N
I
A
H
R
D
V
K
P
E
N
L
L
Y
T
S
K
E
K
D
A
V
L
K
L
T
D
F
G
F
A
K
E
T
----------------------
E
K
Y
D
K
S
C
D
M
W
S
L
G
V
I
M
Y
I
L
L
C
G
F
P
P
F
Y
--------------------
G
F
P
N
P
E
W
S
E
V
S
E
D
A
K
Q
L
I
R
L
L
L
K
T
D
P
T
E
R
L
T
I
T
Q
F
M
N
H
P
W
I
N
Q
S
M
V
V
P
Q
T
P
L
H
T
A
R
V
L
Q
E
D
K
D
H
W
D
E
V
K
E
E
M
T
S
A
L
A
T
M
R
V
D
Y
D
Q
----------------------------------
2
PsiBlast_PDB
60.34
100%
-110
- C1 -
-
3FXW
1
MAPK3_HUMAN
A:
[20-336]
--------------------------------
E
P
K
K
Y
A
V
T
D
D
Y
Q
L
S
K
Q
V
L
G
L
G
V
-
G
K
V
L
E
C
F
H
R
R
T
G
Q
K
C
A
L
K
L
L
Y
D
S
P
K
A
R
Q
E
V
D
H
H
W
Q
A
S
G
G
P
H
I
V
C
I
L
D
V
Y
E
N
M
H
H
G
K
R
C
L
L
I
I
M
E
C
M
E
G
G
E
L
F
S
R
I
Q
E
R
-
D
Q
A
F
T
E
R
E
A
A
E
I
M
R
D
I
G
T
A
I
Q
F
L
H
S
H
N
I
A
H
R
D
V
K
P
E
N
L
L
Y
T
S
K
E
K
D
A
V
L
K
L
T
D
F
G
F
A
K
E
-----------------------
E
K
Y
D
K
S
C
D
M
W
S
L
G
V
I
M
Y
I
L
L
C
G
F
P
P
F
---------------------
G
F
P
N
P
E
W
S
E
V
S
E
D
A
K
Q
L
I
R
L
L
L
K
T
D
P
T
E
R
L
T
I
T
Q
F
M
N
H
P
W
I
N
Q
S
M
V
V
P
Q
T
P
L
H
T
A
R
V
L
Q
E
D
K
D
H
W
D
E
V
K
E
E
M
T
S
A
L
A
T
M
R
V
D
Y
D
Q
V
---------------------------------