@TOME V3
(Feb 2022)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : NEK1_HUMAN: (2019-05-02 )
MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARTCIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGFIAKRIEKFLSPQLIAEEFCLKTFSKFGSQPIPAKRPASGQNSISVMPAQKITKPAAKYGIPLAYKKYGDKKLHEKKPLQKHKQAHQTPEKRVNTGEERRKISEEAARKRRLEFIEKEKKQKDQIISLMKAEQMKRQEKERLERINRAREQGWRNVLSAGGSGEVKAPFLGSGGTIAPSSFSSRGQYEHYHAIFDQMQQQRAEDNEAKWKREIYGRGLPERGILPGVRPGFPYGAAGHHHFPDADDIRKTLKRLKAVSKQANANRQKGQLAVERAKQVEEFLQRKREAMQNKARAEGHMVYLARLRQIRLQNFNERQQIKAKLRGEKKEANHSEGQEGSEEADMRRKKIESLKAHANARAAVLKEQLERKRKEAYEREKKVWEEHLVAKGVKSSDVSPPLGQHETGGSPSKQQMRSVISVTSALKEVGVDSSLTDTRETSEEMQKTNNAISSKREILRRLNENLKAQEDEKGKQNLSDTFEINVHEDAKEHEKEKSVSSDRKKWEAGGQLVIPLDELTLDTSFSTTERHTVGEVIKLGPNGSPRRAWGKSPTDSVLKILGEAELQLQTELLENTTIRSEISPEGEKYKPLITGEKKVQCISHEINPSAIVDSPVETKSPEFSEASPQMSLKLEGNLEEPDDLETEILQEPSGTNKDESLPCTITDVWISEEKETKETQSADRITIQENEVSEDGVSSTVDQLSDIHIEPGTNDSQHSKCDVDKSVQPEPFFHKVVHSEHLNLVPQVQSVQCSPEESFAFRSHSHLPPKNKNKNSLLIGLSTGLFDANNPKMLRTCSLPDLSKLFRTLMDVPTVGDVRQDNLEIDEIEDENIKEGPSDSEDIVFEETDTDLQELQASMEQLLREQPGEEYSEEEESVLKNSDVEPTANGTDVADEDDNPSSESALNEEWHSDNSDGEIASECECDSVFNHLEELRLHLEQEMGFEKFFEVYEKIKAIHEDEDENIEICSKIVQNILGNEHQHLYAKILHLVMADGAYQEDNDE
Atome Classification :
(2 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740.......750.......760.......770.......780.......790.......800.......810.......820.......830.......840.......850.......860.......870.......880.......890.......900.......910.......920.......930.......940.......950.......960.......970.......980.......990.......1000......1010......1020......1030......1040......1050......1060......1070......1080......1090......1100......1110......1120......1130......1140......1150......1160......1170......1180......1190......1200......1210......1220......1230......1240......1250.....
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
MEK
Y
V
R
L
Q
KIGEGSFG
K
A
I
L
V
K
STEDGR
Q
Y
V
I
K
EI
N
I
S
RMS
S
K
E
R
E
E
S
R
R
E
V
A
V
L
ANMKHP
N
I
V
Q
Y
R
E
S
F
EENG
S
L
Y
I
V
M
D
YCEG
G
D
L
F
K
R
INAQKG
V
L
FQE
D
Q
I
L
D
W
F
V
Q
I
C
L
A
L
K
H
VH
D
R
K
I
L
H
R
DIKSQ
N
I
F
LTKDG
T
V
Q
L
G
D
F
G
I
A
R
V
L
N
S
T
V
E
L
A
R
T
CIGTPYYL
S
P
E
I
CENKPYNNK
S
D
I
W
A
L
G
C
V
L
Y
E
L
C
T
L
K
H
A
F
EAG
S
M
K
N
L
V
L
K
I
ISGSFP
P
V
S
L
H
YSY
D
L
R
S
L
V
S
Q
L
F
KRNPRDR
P
S
V
N
S
I
L
E
K
G
F
I
A
K
R
I
E
K
F
L
S
P
Q
L
I
A
E
E
F
C
L
K
T
F
S
K
FGSQPIPAKRPASGQN
S
I
S
VM
P
A
Q
K
ITK
P
A
A
KYGIP
L
A
Y
K
KYGDKKLHEKKP
L
Q
K
H
K
Q
A
HQ
T
P
E
KRVN
T
G
E
E
R
R
K
I
S
E
E
A
A
R
K
R
R
L
E
F
I
E
K
E
K
K
Q
K
D
Q
I
I
S
L
M
K
A
E
Q
M
K
R
Q
E
K
E
R
L
E
R
I
N
R
A
R
E
Q
G
W
R
N
V
L
SAGGSGEVKA
P
F
LGSGGTIAPSSFSSRGQ
Y
E
H
Y
H
A
I
F
D
Q
M
Q
Q
Q
RAED
N
E
A
K
W
K
R
E
I
YGRGLPERGILPGVRPGFPYGAAGHHHFP
D
A
D
D
I
R
K
T
L
K
R
L
K
A
V
S
K
QANANRQK
G
Q
L
A
V
E
R
A
K
Q
V
E
E
F
L
Q
R
K
R
E
A
M
Q
N
K
ARAEG
H
M
V
Y
L
A
R
L
R
Q
I
R
L
QNF
N
E
R
Q
Q
I
K
A
K
LRGEKKEANHSEGQEG
S
E
E
A
D
M
R
R
K
K
I
E
S
L
K
A
HA
N
A
R
A
A
V
L
K
E
Q
L
E
R
K
R
K
E
A
Y
E
R
E
K
K
V
W
E
E
H
L
V
AKGVKSSDVSPPLGQHETGGS
P
S
K
Q
Q
M
R
S
V
I
S
V
T
S
A
L
K
EVGVDSSLTD
T
R
E
T
S
E
E
M
Q
K
TNNA
I
S
S
K
R
E
I
L
R
R
L
N
E
NLKAQEDEKGKQNLSD
T
F
E
I
N
VHE
D
A
K
E
H
E
K
E
KSVSS
D
R
K
K
WEAG
G
Q
L
V
I
P
L
D
E
L
T
LDTSFSTTERHTVG
E
V
I
K
LGPNGSPRRAWGKSP
T
D
S
V
L
K
I
L
G
E
A
E
L
Q
L
Q
T
E
L
LENTTIRSEISPEGEKYKPLITGE
K
K
V
Q
C
I
SHEI
N
P
S
A
IVDSPVETKSPEFSEASP
Q
M
S
L
K
LEGNLEEPD
D
L
E
T
E
I
LQEPSGTNKDESL
P
C
T
I
T
D
V
WISEEKETKETQSA
D
R
I
T
I
QENEVSED
G
V
S
S
T
V
D
Q
L
S
D
I
H
IEPGTNDSQHSKCDVDKSVQP
E
P
F
F
H
K
V
V
H
S
E
HLNLVPQ
V
Q
SVQCSPEE
S
F
AFRSHSHLPPKNKNK
N
S
L
L
I
G
LSTGLFDANNP
K
M
L
R
TCS
L
P
D
L
S
K
L
F
R
T
L
MDVPTVGDVRQDNLEIDEIEDENIKEGPSDSE
D
I
V
FEETDT
D
L
Q
E
L
Q
A
S
M
E
Q
L
L
R
EQPGEEY
S
E
E
E
E
S
V
LKNSDVEPTANGTDVADEDDNPSSESALNEEWHSDNSDGEIASEC
E
C
D
S
V
F
N
H
L
E
E
L
R
L
H
L
E
Q
EM
G
F
E
K
F
F
E
V
Y
E
K
I
K
A
I
HEDEDE
N
I
E
I
C
S
K
I
V
Q
N
I
LGN
E
H
Q
H
L
Y
A
K
I
L
H
L
V
MADGAYQEDNDE
21
Blastp_CBE
96.93
99%
-133
- C1 -
-
4B9D
2
NEK1_HUMAN
B:
[23-306]
M
E
K
Y
V
R
L
Q
K
I
G
-----
K
A
I
L
V
K
S
T
E
D
G
R
Q
Y
V
I
K
E
I
N
I
S
R
M
S
S
K
E
R
E
E
S
R
R
E
V
A
V
L
A
N
M
K
H
P
N
I
V
Q
Y
R
E
S
F
E
E
N
G
S
L
Y
I
V
M
D
Y
C
E
G
G
D
L
F
K
R
I
N
A
Q
K
G
V
L
F
Q
E
D
Q
I
L
D
W
F
V
Q
I
C
L
A
L
K
H
V
H
D
R
K
I
L
H
R
D
I
K
S
Q
N
I
F
L
T
K
D
G
T
V
Q
L
G
D
F
G
I
A
R
V
L
N
S
T
V
E
L
A
R
A
C
I
G
T
P
Y
Y
L
S
P
E
I
C
E
N
K
P
Y
N
N
K
S
D
I
W
A
L
G
C
V
L
Y
E
L
C
T
L
K
H
A
F
E
A
G
S
M
K
N
L
V
L
K
I
I
S
G
S
F
P
P
V
S
L
H
Y
S
Y
D
L
R
S
L
V
S
Q
L
F
K
R
N
P
R
D
R
P
S
V
N
S
I
L
E
K
G
F
I
A
K
R
I
E
K
F
L
S
P
Q
L
I
A
E
E
F
C
L
K
T
F
S
K
F
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
87.97
99%
-136
- C1 -
-
4B9D
1
NEK1_HUMAN
A:
[23-306]
M
E
K
Y
V
R
L
Q
K
I
------
K
A
I
L
V
K
S
T
E
D
G
R
Q
Y
V
I
K
E
I
N
I
S
R
M
S
S
K
E
R
E
E
S
R
R
E
V
A
V
L
A
N
M
K
H
P
N
I
V
Q
Y
R
E
S
F
E
E
N
G
S
L
Y
I
V
M
D
Y
C
E
G
G
D
L
F
K
R
I
N
A
Q
K
G
V
L
F
Q
E
D
Q
I
L
D
W
F
V
Q
I
C
L
A
L
K
H
V
H
D
R
K
I
L
H
R
D
I
K
S
Q
N
I
F
L
T
K
D
G
T
V
Q
L
G
D
F
G
I
A
R
V
L
N
S
T
V
E
L
A
R
A
C
I
G
T
P
Y
Y
L
S
P
E
I
C
E
N
K
P
Y
N
N
K
S
D
I
W
A
L
G
C
V
L
Y
E
L
C
T
L
K
H
A
F
E
A
G
S
M
K
N
L
V
L
K
I
I
S
G
S
F
P
P
V
S
L
H
Y
S
Y
D
L
R
S
L
V
S
Q
L
F
K
R
N
P
R
D
R
P
S
V
N
S
I
L
E
K
G
F
I
A
K
R
I
E
K
F
L
S
P
Q
L
I
A
E
E
F
C
L
K
T
F
S
K
F
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------