@TOME V3
(Feb 2022)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PAK4_HUMAN: (2019-05-03 )
MFGKRKKRVEISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLIEESARRPKPLVDPACITSIQPGAPKTIVRGSKGAKDGALTLLLDEFENMSVTRSNSLRRDSPPPPARARQENGMPEEPATTARGGPGKAGSRGRFAGHSEAGGGSGDRRRAGPEKRPKSSREGSGGPQESSRDKRPLSGPDVGTPQPAGLASGAKLAAGRPFNTYPRADTDHPSRGAQGEPHDVAPNGPSAGGLAIPQSSSSSSRPPTRARGAPSPGVLGPHASEPQLAPPACTPAAPAVPGPPGPRSPQREPQRVSHEQFRAALQLVVDPGDPRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGPPASIVPLMRQNRTR

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

X4Z_A_4(2X4Z)

[Raw transfer]




NJD_A_2(4NJD)
PAK4_HUMAN
[Raw transfer]




8FX_A_2(5XVG)
PAK4_HUMAN
[Raw transfer]




8FU_A_2(5XVA)
PAK4_HUMAN
[Raw transfer]




N53_A_2(4APP)

[Raw transfer]




4T6_A_2(5BMS)

[Raw transfer]




ANP_A_5(4FIF)
PAK4_HUMAN
[Raw transfer]




ANP_B_6(4FIF)
PAK4_HUMAN
[Raw transfer]




2OO_A_2(4O0Y)

[Raw transfer]




M77_A_2(5VEF)
?
[Raw transfer]




ANP_A_3(4FIG)
?
[Raw transfer]




2OL_A_2(4O0V)

[Raw transfer]




ANP_A_3(4JDI)
PAK4_HUMAN
[Raw transfer]




STU_A_2(5VED)
PAK4_HUMAN
[Raw transfer]




2OQ_A_2(4O0X)
?
[Raw transfer]




8FR_A_2(5XVF)
PAK4_HUMAN
[Raw transfer]




ANP_B_6(4FIG)
?
[Raw transfer]




23D_A_2(2CDZ)
PAK4_HUMAN
[Raw transfer]




981_A_2(5VEE)
PAK4_HUMAN
[Raw transfer]




67U_A_2(5I0B)
PAK4_HUMAN
[Raw transfer]




ANP_B_4(5UPK)
?
[Raw transfer]




EDO_A_5(2J0I)
PAK4_HUMAN
[Raw transfer]




EDO_A_9(2Q0N)
PAK4_HUMAN
[Raw transfer]




16 PsiBlast_PDB 88.7399%-123 - C1 -2Q0N 2.5 PAK4_HUMAN
6 PsiBlast_PDB 83.3099%-121 - C1 -4FIF 5.8 PAK4_HUMAN
7 PsiBlast_PDB 78.1499%-122 - C1 -4FIG 6.5 ?
24 Blastp_CBE 69.8699%-129 - C1 -4NJD 7.5 PAK4_HUMAN
21 Blastp_CBE 68.3999%-119 - C1 -4FIG 6.0 ?
18 PsiBlast_PDB 68.2799%-128 - C1 -2J0I 3.5 PAK4_HUMAN
22 Blastp_CBE 66.2399%-119 - C1 -4FIF 5.9 PAK4_HUMAN
2 PsiBlast_PDB 62.4099%-126 - C1 -5VEE 8.5 PAK4_HUMAN
25 Blastp_CBE 60.7499%-120 - C1 -4APP 8.2
17 PsiBlast_PDB 60.0699%-127 - C1 -2CDZ 6.5 PAK4_HUMAN
19 PsiBlast_PDB 59.7699%-121 - C1 -5XVA 6.9 PAK4_HUMAN
26 Blastp_CBE 59.3899%-122 - C1 -2X4Z 7.7
12 PsiBlast_PDB 59.0099%-123 - C1 -4JDI 7.5 PAK4_HUMAN
3 PsiBlast_PDB 57.9599%-122 - C1 -5VEF 4.6 ?
30 Blastp_CBE 57.4399%-126 * C1 *4O0X 9.3 ?
1 PsiBlast_PDB 55.8699%-122 - C1 -5VED 8.2 PAK4_HUMAN
20 PsiBlast_PDB 55.7499%-118 - C1 -5XVG 7.4 PAK4_HUMAN
31 Blastp_CBE 55.5399%-125 - C1 -4O0V 8.5
28 Blastp_CBE 52.0399%-123 - C1 -5BMS 6.6
32 Blastp_CBE 50.5699%-127 - C1 -5XVF 6.5 PAK4_HUMAN
29 Blastp_CBE 49.9299%-122 - C1 -4O0Y 8.1
23 Blastp_CBE 49.9299%-128 - C1 -5I0B 5.8 PAK4_HUMAN
13 PsiBlast_PDB 44.4199%-120 - C1 -5UPK 4.2 ?