@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : RET_HUMAN: (2019-05-03 )
MAKATSGAAGLRLLLLLLLPLLGKVALGLYFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWICIQEDTGLLYLNRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPNISVAYRLLEGEGLPFRCAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPTFPAGVDTASAVVEFKRKEDTVVATLRVFDADVVPASGELVRRYTSTLLPGDTWAQQTFRVEHWPNETSVQANGSFVRATVHDYRLVLNRNLSISENRTMQLAVLVNDSDFQGPGAGVLLLHFNVSVLPVSLHLPSTYSLSVSRRARRFAQIGKVCVENCQAFSGINVQYKLHSSGANCSTLGVVTSAEDTSGILFVNDTKALRRPKCAELHYMVVATDQQTSRQAQAQLLVTVEGSYVAEEAGCPLSCAVSKRRLECEECGGLGSPTGRCEWRQGDGKGITRNFSTCSPSTKTCPDGHCDVVETQDINICPQDCLRGSIVGGHEPGEPRGIKAGYGTCNCFPEEEKCFCEPEDIQDPLCDELCRTVIAAAVLFSFIVSVLLSAFCIHCYHKFAHKPPISSAEMTFRRPAQAFPVSYSSSGARRPSLDSMENQVSVDAFKILEDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVKRRDYLDLAASTPSDSLIYDDGLSEEETPLVDCNNAPLPRALPSTWIENKLYGMSDPNWPGESPVPLTRADGTNTGFPRYPNDSVYANWMLSPSAAKLMDTFDS

Atome Classification :

(11 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADN_A_2(4CKJ)

[Raw transfer]



ADN_A_10(4CKI)

[Raw transfer]



PP1_A_2(5FM3)

[Raw transfer]



PP1_A_3(2IVV)

[Raw transfer]



X2L_A_6(2X2L)

[Raw transfer]



X2M_A_5(2X2M)
RET_HUMAN
[Raw transfer]



ACK_A_6(2IVS)
RET_HUMAN
[Raw transfer]



PP1_A_2(5FM2)

[Raw transfer]



ADN_A_5(6FEK)

[Raw transfer]



DTQ_A_2(5AMN)

[Raw transfer]



ZD6_A_4(2IVU)

[Raw transfer]
4 PsiBlast_PDB 92.3599%-116 - C2 -2IVU 7.9
7 PsiBlast_PDB 91.5199%-115 - C2 -4CKJ 4.6
9 PsiBlast_PDB 90.1998%-108 - C2 -4CKI 4.7
5 PsiBlast_PDB 86.9899%-121 - C2 -2X2L 6.1
6 PsiBlast_PDB 86.7099%-125 - C2 -2X2M 6.2 RET_HUMAN
3 PsiBlast_PDB 85.6399%-114 - C2 -2IVS 5.4 RET_HUMAN
10 PsiBlast_PDB 83.5794%-121 - C2 -5AMN 6.6
11 PsiBlast_PDB 83.4093%-119 - C2 -6FEK 4.7
8 PsiBlast_PDB 83.3599%-118 - C2 -2IVV 6.5
2 PsiBlast_PDB 82.0198%-121 - C2 -5FM3 6.1
1 PsiBlast_PDB 80.7798%-124 - C2 -5FM2 6.1