@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : VRK1_HUMAN: (2019-05-05 )
MPRVKAAQAGRQSSAKRHLAEQFAVGEIITDMAKKEWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKEYKEDPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPEKNKPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLDLSVVENGGLKAKTITKKRKKEIEESKEPGVEDTEWSNTQTEEAIQTRSRTRKRVQK

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

F87_B_10(6CNX)
VRK1_HUMAN
[Raw transfer]




KWJ_A_5(6NPN)
?
[Raw transfer]




EA7_D_15(6CFM)
VRK1_HUMAN
[Raw transfer]




F7D_B_7(6CMM)
VRK1_HUMAN
[Raw transfer]




EA7_B_10(6CFM)
VRK1_HUMAN
[Raw transfer]




E5M_B_7(6BRU)
VRK1_HUMAN
[Raw transfer]




E5M_D_13(6BRU)
VRK1_HUMAN
[Raw transfer]




F8Y_A_5(6CQH)
VRK1_HUMAN
[Raw transfer]




F87_A_5(6CNX)
VRK1_HUMAN
[Raw transfer]




G6J_B_13(6DD4)
VRK1_HUMAN
[Raw transfer]




KWJ_D_25(6NPN)
?
[Raw transfer]




F8Y_B_10(6CQH)
VRK1_HUMAN
[Raw transfer]




KWJ_C_18(6NPN)
?
[Raw transfer]




E8V_A_5(6BU6)
VRK1_HUMAN
[Raw transfer]




7DZ_D_19(5UVF)
VRK1_HUMAN
[Raw transfer]




E1D_B_10(6BP0)
VRK1_HUMAN
[Raw transfer]




7DZ_C_11(5UVF)
VRK1_HUMAN
[Raw transfer]




E1D_D_20(6BP0)
VRK1_HUMAN
[Raw transfer]




E8D_A_7(6BTW)
VRK1_HUMAN
[Raw transfer]




E8D_D_19(6BTW)
VRK1_HUMAN
[Raw transfer]




EA7_A_6(6CFM)
VRK1_HUMAN
[Raw transfer]




E8D_B_11(6BTW)
VRK1_HUMAN
[Raw transfer]




7DZ_A_5(5UVF)
VRK1_HUMAN
[Raw transfer]




KWJ_B_8(6NPN)
?
[Raw transfer]




REB_A_5(3OP5)
VRK1_HUMAN
[Raw transfer]




REB_B_8(3OP5)
VRK1_HUMAN
[Raw transfer]




8E1_A_5(5UKF)
VRK1_HUMAN
[Raw transfer]




8E1_C_14(5UKF)
VRK1_HUMAN
[Raw transfer]




REB_C_11(3OP5)
VRK1_HUMAN
[Raw transfer]




REB_D_15(3OP5)
VRK1_HUMAN
[Raw transfer]




7DZ_B_9(5UVF)
VRK1_HUMAN
[Raw transfer]




8E1_D_19(5UKF)
VRK1_HUMAN
[Raw transfer]




ANP_A_5(6AC9)
VRK1_HUMAN
[Raw transfer]




11 PsiBlast_PDB 66.0496% -90 - C1 -6BU6 6.8 VRK1_HUMAN
15 PsiBlast_PDB 63.8396% -90 - C1 -6CNX 8.9 VRK1_HUMAN
57 Blastp_CBE 63.5397% -89 - C1 -5UVF 6.3 VRK1_HUMAN
62 Blastp_CBE 62.7497% -87 - C1 -5UKF 5.6 VRK1_HUMAN
6 PsiBlast_PDB 62.3496% -86 - C1 -3OP5 7.0 VRK1_HUMAN
52 Blastp_CBE 62.3197% -94 - C1 -6BP0 7.9 VRK1_HUMAN
19 PsiBlast_PDB 62.1996% -87 - C1 -5UKF 6.7 VRK1_HUMAN
18 PsiBlast_PDB 61.9996% -90 - C1 -6NPN 7.6 ?
23 Blastp_CBE 61.0197% -96 - C1 -6NPN 7.6 ?
33 Blastp_CBE 60.7897% -92 * C1 *6CQH 8.0 VRK1_HUMAN
46 Blastp_CBE 60.5297% -95 - C1 -6BTW 7.6 VRK1_HUMAN
60 Blastp_CBE 60.4797% -84 - C1 -3OP5 5.5 VRK1_HUMAN
10 PsiBlast_PDB 60.1396% -88 - C1 -6BTW 7.1 VRK1_HUMAN
40 Blastp_CBE 60.0297% -93 - C1 -6CFM 7.3 VRK1_HUMAN
12 PsiBlast_PDB 59.8496% -93 - C1 -6CFM 7.0 VRK1_HUMAN
14 PsiBlast_PDB 59.8396% -93 - C1 -6CQH 8.0 VRK1_HUMAN
54 Blastp_CBE 59.8197%-102 - C1 -6BP0 7.7 VRK1_HUMAN
49 Blastp_CBE 59.5097% -98 - C1 -6BRU 7.1 VRK1_HUMAN
7 PsiBlast_PDB 59.3896% -88 - C1 -5UVF 6.8 VRK1_HUMAN
36 Blastp_CBE 59.2397% -94 - C1 -6CNX 8.3 VRK1_HUMAN
5 PsiBlast_PDB 58.3196% -89 - C1 -6AC9 3.5 VRK1_HUMAN
24 Blastp_CBE 58.0397% -85 - C1 -6NPN 6.5 ?
27 Blastp_CBE 57.7997% -91 - C1 -6DD4 8.1 VRK1_HUMAN
51 Blastp_CBE 55.9697% -99 - C1 -6BRU 7.1 VRK1_HUMAN
59 Blastp_CBE 55.1997% -97 - C1 -3OP5 6.4 VRK1_HUMAN
48 Blastp_CBE 54.6397%-103 - C1 -6BTW 7.3 VRK1_HUMAN
39 Blastp_CBE 53.6997% -98 - C1 -6CMM 8.1 VRK1_HUMAN
42 Blastp_CBE 52.8497%-102 - C1 -6CFM 5.6 VRK1_HUMAN
58 Blastp_CBE 51.9597% -93 - C1 -3OP5 5.7 VRK1_HUMAN
55 Blastp_CBE 51.7597% -96 - C1 -5UVF 7.1 VRK1_HUMAN
56 Blastp_CBE 50.7097% -92 - C1 -5UVF 7.2 VRK1_HUMAN
25 Blastp_CBE 50.4097% -95 - C1 -6NPN 6.5 ?
61 Blastp_CBE 27.2297% -95 - C1 -5UKF 4.5 VRK1_HUMAN