@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1B2_RARb: (2019-04-24 )
MTTSGHACPVPAVNGHMTHYPATPYPLLFPPVIGGLSLPPLHGLHGHPPPSGCSTPSPATIETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVSQSPLVQ

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

JYH_B_6(4JYH)
RARB_HUMAN
[Raw transfer]




1NY_B_7(4JYG)
RARB_HUMAN
[Raw transfer]




1NY_A_5(4JYG)
RARB_HUMAN
[Raw transfer]




REA_B_5(3A9E)
RARA_HUMAN
[Raw transfer]




184_A_2(1FCX)
RARG_HUMAN
[Raw transfer]




JYH_A_5(4JYH)
RARB_HUMAN
[Raw transfer]




TTB_A_5(4DM6)
RARB_HUMAN
[Raw transfer]




TTB_B_6(4DM6)
RARB_HUMAN
[Raw transfer]




394_A_2(1EXA)
RARG_HUMAN
[Raw transfer]




REA_A_5(4DM8)
RARB_HUMAN
[Raw transfer]




564_A_2(1FCY)
RARG_HUMAN
[Raw transfer]




156_A_2(1FCZ)
RARG_HUMAN
[Raw transfer]




REA_L_12(1XDK)
RARB_MOUSE
[Raw transfer]




REA_B_12(5UAN)
RARB_HUMAN
[Raw transfer]




REA_B_2(3LBD)
RARG_HUMAN
[Raw transfer]




254_A_2(1FD0)
RARG_HUMAN
[Raw transfer]




TTB_B_2(1XAP)
RARB_HUMAN
[Raw transfer]




JYI_B_6(4JYI)
RARB_HUMAN
[Raw transfer]




REA_B_6(4DM8)
RARB_HUMAN
[Raw transfer]




JYI_A_5(4JYI)
RARB_HUMAN
[Raw transfer]




REA_J_10(1XDK)
RARB_MOUSE
[Raw transfer]




961_A_2(1EXX)
RARG_HUMAN
[Raw transfer]




E9T_A_2(6FX0)
RARG_HUMAN
[Raw transfer]




961_B_2(4LBD)
RARG_HUMAN
[Raw transfer]




EQN_A_3(3KMR)
RARA_HUMAN
[Raw transfer]




EQO_A_10(3KMZ)
RARA_HUMAN
[Raw transfer]




9CR_A_2(5M24)
RARG_HUMAN
[Raw transfer]




EQO_B_5(3KMZ)
RARA_HUMAN
[Raw transfer]




BMS_C_3(1DKF)
RARA_HUMAN
[Raw transfer]




LUF_C_6(4DQM)
RARA_HUMAN
[Raw transfer]




6Q7_A_2(5K13)
RARA_HUMAN
[Raw transfer]




LUF_A_5(4DQM)
RARA_HUMAN
[Raw transfer]




1 PsiBlast_PDB 81.5198%-126 - C1 -5UAN 7.8 RARB_HUMAN
8 PsiBlast_PDB 51.7299%-141 - C1 -4JYH 10.2 RARB_HUMAN
25 Blastp_CBE 50.7599%-138 - C1 -4JYH 10.3 RARB_HUMAN
23 Blastp_CBE 50.26100%-133 - C1 -4DM6 10.2 RARB_HUMAN
9 PsiBlast_PDB 50.2499%-137 - C1 -4JYI 11.4 RARB_HUMAN
7 PsiBlast_PDB 49.9599%-142 - C1 -4JYG 11.1 RARB_HUMAN
24 Blastp_CBE 48.8499%-135 - C1 -4JYI 11.8 RARB_HUMAN
14 PsiBlast_PDB 43.7888%-141 - C1 -1DKF 10.6 RARA_HUMAN
30 Blastp_CBE 41.7488%-141 * C1 *1FCY 10.7 RARG_HUMAN
22 Blastp_CBE 41.41100%-129 - C1 -4DM8 8.5 RARB_HUMAN
26 Blastp_CBE 41.3699%-129 - C1 -4JYG 11.2 RARB_HUMAN
20 PsiBlast_PDB 41.3286%-132 - C1 -4LBD 10.8 RARG_HUMAN
17 PsiBlast_PDB 40.0086%-135 - C1 -1EXX 9.3 RARG_HUMAN
33 Blastp_CBE 39.9188%-139 - C1 -1FCX 10.6 RARG_HUMAN
10 PsiBlast_PDB 39.8487%-131 - C1 -3A9E 8.2 RARA_HUMAN
5 PsiBlast_PDB 39.80100%-130 - C1 -4DM6 10.2 RARB_HUMAN
31 Blastp_CBE 39.0588%-138 - C1 -1FD0 10.4 RARG_HUMAN
13 PsiBlast_PDB 38.2086%-134 - C1 -5K13 11.5 RARA_HUMAN
6 PsiBlast_PDB 38.07100%-131 - C1 -4DM8 8.5 RARB_HUMAN
32 Blastp_CBE 37.6788%-138 - C1 -1FCZ 10.0 RARG_HUMAN
28 Blastp_CBE 37.4788%-138 - C1 -4DQM 5.8 RARA_HUMAN
16 PsiBlast_PDB 35.5386%-134 - C1 -1EXA 9.7 RARG_HUMAN
2 PsiBlast_PDB 35.4176%-136 - C1 -6FX0 10.5 RARG_HUMAN
29 Blastp_CBE 33.8586%-134 - C1 -5M24 8.9 RARG_HUMAN
4 PsiBlast_PDB 33.48100%-133 - C1 -1XAP 10.2 RARB_HUMAN
11 PsiBlast_PDB 31.9987%-131 - C1 -3KMR 9.8 RARA_HUMAN
15 PsiBlast_PDB 31.6388%-133 - C1 -4DQM 5.6 RARA_HUMAN
3 PsiBlast_PDB 31.3898%-124 - C1 -1XDK 8.8 RARB_MOUSE
19 PsiBlast_PDB 30.8986%-125 - C1 -3LBD 8.7 RARG_HUMAN
21 Blastp_CBE 30.4799%-125 - C1 -1XDK 8.8 RARB_MOUSE
12 PsiBlast_PDB 11.8187%-127 - C1 -3KMZ 11.5 RARA_HUMAN
27 Blastp_CBE 9.3488%-128 - C1 -3KMZ 11.3 RARA_HUMAN