@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1F1_RORa: (2019-04-24 )
MNEGAPGDSDLETEARVPWSIMGHCLRTGQARMSATPTPAGEGARRDELFGILQILHQCILSSGDAFVLTGVCCSWRQNGKPPYSQKEDKEVQTGYMNAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG

Atome Classification :

(7 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

4D8_B_7(4S15)

[Raw transfer]



C3S_B_2(1S0X)

[Raw transfer]



4D8_A_5(4S15)
RORA_HUMAN
[Raw transfer]



ARL_A_3(1NQ7)
RORB_RAT
[Raw transfer]



REA_C_3(1N4H)
RORB_RAT
[Raw transfer]



CLR_B_2(1N83)

[Raw transfer]



STE_C_3(1K4W)
RORB_RAT
[Raw transfer]
2 PsiBlast_PDB 94.81100%-172 - C1 -1N83 8.9
3 PsiBlast_PDB 93.49100%-171 - C1 -1S0X 9.9
1 PsiBlast_PDB 90.98100%-168 - C1 -4S15 9.0 RORA_HUMAN
21 Blastp_CBE 88.99100%-161 - C1 -4S15 8.6
6 PsiBlast_PDB 79.2762%-168 - C1 -1NQ7 8.3 RORB_RAT
4 PsiBlast_PDB 78.0962%-167 - C1 -1K4W 2.3 RORB_RAT
5 PsiBlast_PDB 75.6661%-162 - C1 -1N4H 6.5 RORB_RAT