@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1H2_LXRb: (2019-04-24 )
MSSPTTSSLDTPLPGNGPPQPGAPSSSPTVKEEGPEPWPGGPDPDVPGTDEASSACSTDWVIPDPEEEPERKRKKGPAPKMLGHELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGARRYACRGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQSQSQSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

67S_A_5(5I4V)
NCOA2_HUMAN
[Raw transfer]



61X_B_6(3KFC)
NR1H2_HUMAN
[Raw transfer]



6OX_D_9(5JY3)
NR1H2_HUMAN
[Raw transfer]



CO1_E_5(1P8D)
NR1H2_HUMAN
[Raw transfer]



61X_D_7(3KFC)
NR1H2_HUMAN
[Raw transfer]



652_B_7(4RAK)
NR1H2_HUMAN
[Raw transfer]



G58_A_3(3L0E)
NR1H2_HUMAN
[Raw transfer]



668_D_8(5HJP)
NR1H2_HUMAN
[Raw transfer]



444_H_8(1PQC)
NR1H2_HUMAN
[Raw transfer]



668_B_5(5HJP)
NR1H2_HUMAN
[Raw transfer]



CO1_F_6(1P8D)
NR1H2_HUMAN
[Raw transfer]



44B_H_8(1PQ9)
NR1H2_HUMAN
[Raw transfer]



965_D_7(1PQ6)
NR1H2_HUMAN
[Raw transfer]



LX2_D_8(3FC6)
NR1H3_MOUSE
[Raw transfer]



965_B_6(1PQ6)
NR1H2_HUMAN
[Raw transfer]



LX2_B_6(3FC6)
NR1H3_MOUSE
[Raw transfer]



6OX_B_6(5JY3)
NR1H2_HUMAN
[Raw transfer]



668_A_5(5HJS)
NR1H3_HUMAN
[Raw transfer]



668_B_6(5HJS)
NR1H3_HUMAN
[Raw transfer]



965_A_3(3IPQ)
NR1H3_HUMAN
[Raw transfer]



O40_B_6(3IPU)
NR1H3_HUMAN
[Raw transfer]



LO2_B_6(3FAL)
NR1H3_MOUSE
[Raw transfer]



LO2_D_8(3FAL)
NR1H3_MOUSE
[Raw transfer]



6OX_C_8(5JY3)
NR1H2_HUMAN
[Raw transfer]



O40_A_5(3IPU)
NR1H3_HUMAN
[Raw transfer]



0KS_A_5(4DK7)
NR1H2_HUMAN
[Raw transfer]



6OX_A_5(5JY3)
NR1H2_HUMAN
[Raw transfer]



0KT_A_5(4DK8)
NR1H2_HUMAN
[Raw transfer]



444_G_7(1PQC)
NR1H2_HUMAN
[Raw transfer]



4KQ_A_3(5AVL)
NR1H3_HUMAN
[Raw transfer]



O90_A_6(3IPS)
NR1H3_HUMAN
[Raw transfer]



0KT_C_11(4DK8)
NR1H2_HUMAN
[Raw transfer]



444_F_6(1PQC)
NR1H2_HUMAN
[Raw transfer]



4KM_A_5(5AVI)
NR1H3_HUMAN
[Raw transfer]



4KM_C_6(5AVI)
NR1H3_HUMAN
[Raw transfer]



O90_B_7(3IPS)
NR1H3_HUMAN
[Raw transfer]



444_E_5(1UHL)
NR1H3_HUMAN
[Raw transfer]



44B_L_12(1PQ9)
NR1H2_HUMAN
[Raw transfer]



44B_J_10(1PQ9)
NR1H2_HUMAN
[Raw transfer]



IPA_A_8(1PQ6)
NR1H2_HUMAN
[Raw transfer]



BU1_A_3(4RAK)
NR1H2_HUMAN
[Raw transfer]
13 PsiBlast_PDB 49.1097%-132 - C1 -3L0E 10.4 NR1H2_HUMAN
14 PsiBlast_PDB 48.8998%-137 - C1 -5HJP 10.3 NR1H2_HUMAN
12 PsiBlast_PDB 47.4297%-128 - C1 -5I4V 9.0 NCOA2_HUMAN (first)
31 Blastp_CBE 47.41100%-128 - C1 -1PQ6 12.6 NR1H2_HUMAN
4 PsiBlast_PDB 45.22100%-136 - C1 -1PQ6 2.1 NR1H2_HUMAN
30 Blastp_CBE 45.07100%-149 - C1 -1PQ6 11.9 NR1H2_HUMAN
38 Blastp_CBE 43.4298%-130 - C1 -5HJP 10.1 NR1H2_HUMAN
15 PsiBlast_PDB 42.9296%-132 - C1 -4DK7 6.9 NR1H2_HUMAN
10 PsiBlast_PDB 41.9299%-121 - C1 -1P8D 9.1 NR1H2_HUMAN
36 Blastp_CBE 41.3599%-119 - C1 -1P8D 9.2 NR1H2_HUMAN
17 PsiBlast_PDB 41.2677%-132 - C1 -3FC6 13.3 NR1H3_MOUSE
11 PsiBlast_PDB 41.0598%-128 - C1 -4DK8 9.1 NR1H2_HUMAN
35 Blastp_CBE 41.0098%-130 - C1 -4RAK 11.9 NR1H2_HUMAN
29 Blastp_CBE 40.98100%-123 - C1 -1PQ9 5.9 NR1H2_HUMAN
37 Blastp_CBE 40.8999%-131 - C1 -4DK8 8.7 NR1H2_HUMAN
22 Blastp_CBE 40.89100%-128 - C1 -3KFC 9.6 NR1H2_HUMAN
23 Blastp_CBE 40.87100%-127 - C1 -3KFC 10.5 NR1H2_HUMAN
26 Blastp_CBE 40.09100%-121 - C1 -1PQC 8.6 NR1H2_HUMAN
25 Blastp_CBE 39.98100%-127 - C1 -1PQC 8.2 NR1H2_HUMAN
34 Blastp_CBE 39.0698%-131 - C1 -5JY3 11.6 NR1H2_HUMAN
32 Blastp_CBE 38.5598%-130 - C1 -5JY3 11.7 NR1H2_HUMAN
24 Blastp_CBE 38.28100%-150 - C1 -1PQC 3.3 NR1H2_HUMAN
27 Blastp_CBE 37.94100%-152 - C1 -1PQ9 6.0 NR1H2_HUMAN
42 Blastp_CBE 37.8377%-124 - C1 -3FC6 13.1 NR1H3_MOUSE
28 Blastp_CBE 37.77100%-121 - C1 -1PQ9 5.8 NR1H2_HUMAN
45 Blastp_CBE 37.7177%-144 * C1 *5HJS 10.2 NR1H3_HUMAN
46 Blastp_CBE 37.6577%-145 - C1 -5HJS 9.9 NR1H3_HUMAN
43 Blastp_CBE 37.6577%-130 - C1 -3FAL 10.0 NR1H3_MOUSE
18 PsiBlast_PDB 36.7577%-132 - C1 -3FAL 9.7 NR1H3_MOUSE
51 Blastp_CBE 35.1377%-130 - C1 -3IPU 9.0 NR1H3_HUMAN
52 Blastp_CBE 34.9477%-142 - C1 -3IPS 8.8 NR1H3_HUMAN
50 Blastp_CBE 34.9177%-129 - C1 -3IPU 8.9 NR1H3_HUMAN
48 Blastp_CBE 34.2977%-141 - C1 -5AVI 9.7 NR1H3_HUMAN
20 PsiBlast_PDB 34.2476%-144 - C1 -3IPS 10.0 NR1H3_HUMAN
47 Blastp_CBE 33.9577%-148 - C1 -5AVL 11.1 NR1H3_HUMAN
49 Blastp_CBE 33.7477%-142 - C1 -5AVI 9.5 NR1H3_HUMAN
19 PsiBlast_PDB 31.6276%-140 - C1 -3IPQ 12.6 NR1H3_HUMAN
8 PsiBlast_PDB 28.1297%-118 - C1 -4RAK 2.4 NR1H2_HUMAN
9 PsiBlast_PDB 26.4597%-127 - C1 -5JY3 10.7 NR1H2_HUMAN
33 Blastp_CBE 24.0198%-126 - C1 -5JY3 11.3 NR1H2_HUMAN
44 Blastp_CBE 15.2578%-136 - C1 -1UHL 6.2 NR1H3_HUMAN