@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1H3_LXRa: (2019-04-24 )
MSLWLGAPVPDIPPDSAVELWKPGAQDASSQAQGGSSCILREEARMPHSAGGTAGVGLEAAEPTALLTRAEPPSEPTEIRPQKRKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYICHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAHATSLPPRASSPPQILPQLSPEQLGMIEKLVAAQQQCNRRSFSDRLRVTPWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE

Atome Classification :

(45 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LX2_B_6(3FC6)
NR1H3_MOUSE
[Raw transfer]




O40_B_6(3IPU)
NR1H3_HUMAN
[Raw transfer]




O40_A_5(3IPU)
NR1H3_HUMAN
[Raw transfer]




LX2_D_8(3FC6)
NR1H3_MOUSE
[Raw transfer]




LO2_B_6(3FAL)
NR1H3_MOUSE
[Raw transfer]




LO2_D_8(3FAL)
NR1H3_MOUSE
[Raw transfer]




965_A_3(3IPQ)
NR1H3_HUMAN
[Raw transfer]




4KQ_A_3(5AVL)
NR1H3_HUMAN
[Raw transfer]




965_D_7(1PQ6)
NR1H2_HUMAN
[Raw transfer]




965_B_6(1PQ6)
NR1H2_HUMAN
[Raw transfer]




4KM_C_6(5AVI)
NR1H3_HUMAN
[Raw transfer]




965_A_5(1PQ6)
NR1H2_HUMAN
[Raw transfer]




67S_A_5(5I4V)
NCOA2_HUMAN
[Raw transfer]




O90_A_6(3IPS)
NR1H3_HUMAN
[Raw transfer]




4KM_A_5(5AVI)
NR1H3_HUMAN
[Raw transfer]




444_H_8(1PQC)
NR1H2_HUMAN
[Raw transfer]




44B_H_8(1PQ9)
NR1H2_HUMAN
[Raw transfer]




668_A_5(5HJS)
NR1H3_HUMAN
[Raw transfer]




61X_D_7(3KFC)
NR1H2_HUMAN
[Raw transfer]




668_B_6(5HJS)
NR1H3_HUMAN
[Raw transfer]




61X_B_6(3KFC)
NR1H2_HUMAN
[Raw transfer]




61X_A_5(3KFC)
NR1H2_HUMAN
[Raw transfer]




444_E_5(1UHL)
NR1H3_HUMAN
[Raw transfer]




668_B_5(5HJP)
NR1H2_HUMAN
[Raw transfer]




O90_B_7(3IPS)
NR1H3_HUMAN
[Raw transfer]




444_E_5(1PQC)
NR1H2_HUMAN
[Raw transfer]




668_D_8(5HJP)
NR1H2_HUMAN
[Raw transfer]




444_F_6(1PQC)
NR1H2_HUMAN
[Raw transfer]




444_G_7(1PQC)
NR1H2_HUMAN
[Raw transfer]




CO1_E_5(1P8D)
NR1H2_HUMAN
[Raw transfer]




CO1_F_6(1P8D)
NR1H2_HUMAN
[Raw transfer]




652_B_7(4RAK)
NR1H2_HUMAN
[Raw transfer]




444_A_2(1UPV)
NR1H2_HUMAN
[Raw transfer]




444_A_2(1UPW)
NR1H2_HUMAN
[Raw transfer]




6OX_D_9(5JY3)
NR1H2_HUMAN
[Raw transfer]




44B_L_12(1PQ9)
NR1H2_HUMAN
[Raw transfer]




652_A_5(4RAK)
NR1H2_HUMAN
[Raw transfer]




G58_A_3(3L0E)
NR1H2_HUMAN
[Raw transfer]




6OX_C_8(5JY3)
NR1H2_HUMAN
[Raw transfer]




44B_F_6(1PQ9)
NR1H2_HUMAN
[Raw transfer]




44B_J_10(1PQ9)
NR1H2_HUMAN
[Raw transfer]




6OX_B_6(5JY3)
NR1H2_HUMAN
[Raw transfer]




6OX_A_5(5JY3)
NR1H2_HUMAN
[Raw transfer]




0KT_A_5(4DK8)
NR1H2_HUMAN
[Raw transfer]




0KT_C_11(4DK8)
NR1H2_HUMAN
[Raw transfer]




27 Blastp_CBE 58.0896%-131 - C1 -3FAL 10.0 NR1H3_MOUSE
26 Blastp_CBE 57.6496%-129 * C1 *3FC6 13.1 NR1H3_MOUSE
3 PsiBlast_PDB 56.18100%-133 - C1 -3IPU 8.8 NR1H3_HUMAN
9 PsiBlast_PDB 56.0195%-137 - C1 -3FC6 13.3 NR1H3_MOUSE
10 PsiBlast_PDB 55.8795%-132 - C1 -3FAL 9.7 NR1H3_MOUSE
23 Blastp_CBE 54.93100%-134 - C1 -3IPU 8.9 NR1H3_HUMAN
22 Blastp_CBE 54.90100%-145 - C1 -5AVI 9.5 NR1H3_HUMAN
6 PsiBlast_PDB 54.58100%-152 - C1 -5HJS 10.0 NR1H3_HUMAN
4 PsiBlast_PDB 54.56100%-145 - C1 -5AVI 9.5 NR1H3_HUMAN
21 Blastp_CBE 53.66100%-151 - C1 -5HJS 10.2 NR1H3_HUMAN
24 Blastp_CBE 52.92100%-148 - C1 -3IPS 8.8 NR1H3_HUMAN
5 PsiBlast_PDB 49.56100%-150 - C1 -5AVL 11.1 NR1H3_HUMAN
2 PsiBlast_PDB 48.36100%-148 - C1 -3IPS 9.9 NR1H3_HUMAN
51 Blastp_CBE 47.8076%-129 - C1 -5I4V 9.0 NCOA2_HUMAN (first)
31 Blastp_CBE 47.7377%-123 - C1 -1P8D 9.2 NR1H2_HUMAN
1 PsiBlast_PDB 46.27100%-146 - C1 -3IPQ 12.6 NR1H3_HUMAN
48 Blastp_CBE 45.6776%-133 - C1 -3L0E 10.4 NR1H2_HUMAN
41 Blastp_CBE 45.2377%-130 - C1 -1PQ6 12.6 NR1H2_HUMAN
50 Blastp_CBE 44.7676%-140 - C1 -5HJP 10.2 NR1H2_HUMAN
12 PsiBlast_PDB 43.6976%-126 - C1 -1P8D 9.1 NR1H2_HUMAN
39 Blastp_CBE 42.6377%-125 - C1 -1PQ9 5.9 NR1H2_HUMAN
36 Blastp_CBE 42.6177%-123 - C1 -1PQC 8.6 NR1H2_HUMAN
18 PsiBlast_PDB 41.0876%-134 - C1 -1PQ9 5.9 NR1H2_HUMAN
33 Blastp_CBE 40.5777%-130 - C1 -3KFC 10.5 NR1H2_HUMAN
17 PsiBlast_PDB 40.4276%-139 - C1 -1PQ6 11.7 NR1H2_HUMAN
47 Blastp_CBE 39.9477%-133 - C1 -4RAK 11.9 NR1H2_HUMAN
49 Blastp_CBE 39.8976%-133 - C1 -5HJP 10.0 NR1H2_HUMAN
20 PsiBlast_PDB 39.6876%-130 - C1 -3KFC 10.4 NR1H2_HUMAN
19 PsiBlast_PDB 39.5076%-133 - C1 -1PQC 8.1 NR1H2_HUMAN
46 Blastp_CBE 38.6477%-134 - C1 -5JY3 11.6 NR1H2_HUMAN
32 Blastp_CBE 38.4777%-129 - C1 -3KFC 9.6 NR1H2_HUMAN
43 Blastp_CBE 38.3777%-130 - C1 -4DK8 9.1 NR1H2_HUMAN
35 Blastp_CBE 37.7577%-130 - C1 -1PQC 8.2 NR1H2_HUMAN
38 Blastp_CBE 36.9077%-125 - C1 -1PQ9 5.8 NR1H2_HUMAN
15 PsiBlast_PDB 36.3876%-136 - C1 -1UPV 6.6 NR1H2_HUMAN
8 PsiBlast_PDB 35.7799%-137 - C1 -1UHL 6.2 NR1H3_HUMAN
16 PsiBlast_PDB 35.7476%-128 - C1 -1UPW 6.1 NR1H2_HUMAN
44 Blastp_CBE 35.5877%-131 - C1 -5JY3 11.7 NR1H2_HUMAN
40 Blastp_CBE 35.4877%-151 - C1 -1PQ6 11.9 NR1H2_HUMAN
42 Blastp_CBE 34.5277%-136 - C1 -4DK8 8.7 NR1H2_HUMAN
37 Blastp_CBE 34.2377%-152 - C1 -1PQ9 6.0 NR1H2_HUMAN
34 Blastp_CBE 33.5977%-151 - C1 -1PQC 3.3 NR1H2_HUMAN
13 PsiBlast_PDB 28.7776%-120 - C1 -4RAK 10.1 NR1H2_HUMAN
14 PsiBlast_PDB 27.1276%-130 - C1 -5JY3 10.6 NR1H2_HUMAN
45 Blastp_CBE 26.9377%-127 - C1 -5JY3 11.3 NR1H2_HUMAN