@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1I1_VDR: (2019-04-24 )
MEAMAASTSLPDPGDFDRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMILKRKEEEALKDSLRPKLSEEQQRIIAILLDAHHKTYDPTYSDFCQFRPPVRVNDGGGSHPSRPNSRHTPSFSGDSSSSCSDHCITSSDMMDSSSFSNLDLSEEDSDDPSVTLELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQPECSMKLTPLVLEVFGNEIS

Atome Classification :

(102 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TFY_A_2(4ITF)
VDR_HUMAN
[Raw transfer]




VHW_A_2(3VHW)
VDR_HUMAN
[Raw transfer]




FMV_A_2(3OGT)
VDR_HUMAN
[Raw transfer]




O1C_B_2(2HB7)
VDR_HUMAN
[Raw transfer]




TEY_A_2(4ITE)
VDR_HUMAN
[Raw transfer]




FMV_A_2(3TKC)
?
[Raw transfer]




VDA_A_3(2ZL9)
VDR_RAT
[Raw transfer]




90L_A_2(5YSY)
VDR_HUMAN
[Raw transfer]




TX5_B_2(1TXI)
VDR_HUMAN
[Raw transfer]




KH1_B_2(1IE8)
VDR_HUMAN
[Raw transfer]




VDX_B_2(1DB1)
VDR_HUMAN
[Raw transfer]




2KB_A_2(5GT4)
VDR_HUMAN
[Raw transfer]




OCC_B_2(2HAR)
VDR_HUMAN
[Raw transfer]




90O_A_2(5YT2)
VDR_HUMAN
[Raw transfer]




ED9_A_2(3WGP)
VDR_HUMAN
[Raw transfer]




VDX_C_3(1RK3)
VDR_RAT
[Raw transfer]




MVD_B_2(2HB8)
VDR_HUMAN
[Raw transfer]




C3O_B_2(2HAS)
VDR_HUMAN
[Raw transfer]




DS6_A_2(3AZ3)
VDR_HUMAN
[Raw transfer]




CA9_A_2(3AUR)
VDR_HUMAN
[Raw transfer]




MCZ_A_2(3B0T)
VDR_HUMAN
[Raw transfer]




COV_A_2(3CS4)
VDR_HUMAN
[Raw transfer]




23R_X_2(3A40)
VDR_HUMAN
[Raw transfer]




VDX_A_2(3M7R)
VDR_HUMAN
[Raw transfer]




ZNE_A_2(3KPZ)
VDR_HUMAN
[Raw transfer]




ZYD_A_2(3P8X)
VDR_HUMAN
[Raw transfer]




2MV_X_2(3A3Z)
VDR_HUMAN
[Raw transfer]




8J0_A_3(5XZF)
VDR_RAT
[Raw transfer]




YSD_A_3(3VRV)
VDR_RAT
[Raw transfer]




C33_B_2(2HAM)
VDR_HUMAN
[Raw transfer]




E05_A_3(6FOD)
VDRA_DANRE
[Raw transfer]




EB1_B_2(1S0Z)
VDR_HUMAN
[Raw transfer]




0CO_A_2(3CS6)
VDR_HUMAN
[Raw transfer]




CA9_A_2(3AUQ)
VDR_HUMAN
[Raw transfer]




9CW_A_3(5NMA)
VDRA_DANRE
[Raw transfer]




VD5_A_3(2O4R)
VDR_RAT
[Raw transfer]




41W_A_2(3X36)
VDR_HUMAN
[Raw transfer]




VDX_B_2(1IE9)
VDR_HUMAN
[Raw transfer]




MC9_B_2(1S19)
VDR_HUMAN
[Raw transfer]




YS5_A_3(3VRW)
VDR_RAT
[Raw transfer]




VDX_C_3(2HC4)
VDRA_DANRE
[Raw transfer]




VDB_A_3(2ZLA)
VDR_RAT
[Raw transfer]




VD4_A_3(2O4J)
VDR_RAT
[Raw transfer]




3AJ_A_2(3WWR)
VDR_HUMAN
[Raw transfer]




41V_A_2(3X31)
VDR_HUMAN
[Raw transfer]




VDP_A_3(5GID)
VDR_RAT
[Raw transfer]




DZW_A_3(6FOB)
VDRA_DANRE
[Raw transfer]




YSV_A_3(5B41)
VDR_RAT
[Raw transfer]




VDP_A_5(5GIE)
VDR_RAT
[Raw transfer]




BIV_C_3(2HCD)
VDRA_DANRE
[Raw transfer]




E0E_A_3(6FO9)
VDRA_DANRE
[Raw transfer]




VDZ_A_3(1RJK)
VDR_RAT
[Raw transfer]




LX3_A_3(6FO7)
VDRA_DANRE
[Raw transfer]




91W_A_3(5NKY)
VDRA_DANRE
[Raw transfer]




3EV_A_2(3A78)
VDR_HUMAN
[Raw transfer]




8J3_A_3(5XZH)
VDR_RAT
[Raw transfer]




TEJ_A_3(3A2H)
VDR_RAT
[Raw transfer]




YS3_A_3(3VRU)
VDR_RAT
[Raw transfer]




DS3_A_2(3AZ2)
VDR_HUMAN
[Raw transfer]




EIM_A_2(3AX8)
VDR_HUMAN
[Raw transfer]




TEJ_A_2(3A2I)
VDR_HUMAN
[Raw transfer]




XE4_C_3(2HBH)
VDRA_DANRE
[Raw transfer]




DS2_A_2(3AZ1)
VDR_HUMAN
[Raw transfer]




YW2_A_3(4YNK)
VDR_RAT
[Raw transfer]




BIV_A_3(4IA7)
VDRA_DANRE
[Raw transfer]




8VM_A_2(5V39)
VDR_HUMAN
[Raw transfer]




BIV_A_3(4IA3)
VDRA_DANRE
[Raw transfer]




VDX_A_3(4RUJ)
VDRA_DANRE
[Raw transfer]




BIV_A_3(4IA2)
VDRA_DANRE
[Raw transfer]




0VO_A_3(4G1Y)
VDRA_DANRE
[Raw transfer]




VDP_D_6(5GIE)
VDR_RAT
[Raw transfer]




0VP_A_3(4G21)
VDRA_DANRE
[Raw transfer]




0VK_A_3(4G1D)
VDRA_DANRE
[Raw transfer]




BIV_A_3(4IA1)
VDRA_DANRE
[Raw transfer]




BIV_X_3(4RUO)
VDRA_DANRE
[Raw transfer]




8FF_A_3(5XUQ)
VDR_RAT
[Raw transfer]




484_A_3(4G20)
VDRA_DANRE
[Raw transfer]




0VP_A_3(4G1Z)
VDRA_DANRE
[Raw transfer]




DLC_A_3(5GIC)
VDR_RAT
[Raw transfer]




0S4_A_3(4FHI)
VDRA_DANRE
[Raw transfer]




TEJ_A_2(3A2J)
VDR_HUMAN
[Raw transfer]




8C0_A_3(5XPM)
VDR_RAT
[Raw transfer]




0VQ_A_2(4G2I)
VDR_HUMAN
[Raw transfer]




6DS_A_2(3W0C)
VDR_HUMAN
[Raw transfer]




0U3_A_3(4FHH)
VDRA_DANRE
[Raw transfer]




AYK_A_3(5OW7)
VDRA_DANRE
[Raw transfer]




0VQ_A_3(4G2H)
VDRA_DANRE
[Raw transfer]




6VH_A_3(5LGA)
VDRA_DANRE
[Raw transfer]




H97_A_3(3O1E)
VDRA_DANRE
[Raw transfer]




G72_A_3(3O1D)
VDRA_DANRE
[Raw transfer]




H97_A_3(4RUP)
VDRA_DANRE
[Raw transfer]




DS4_A_2(3W0Y)
VDR_HUMAN
[Raw transfer]




DS5_A_2(3W0A)
VDR_HUMAN
[Raw transfer]




C5D_A_4(3DR1)
VDRA_DANRE
[Raw transfer]




B0B_A_3(5OWD)
VDRA_DANRE
[Raw transfer]




AYT_A_3(5OW9)
VDRA_DANRE
[Raw transfer]




9KR_A_3(5ZWF)
VDR_RAT
[Raw transfer]




9KX_A_3(5ZWH)
VDR_RAT
[Raw transfer]




4OA_C_3(4Q0A)
VDRA_DANRE
[Raw transfer]




10S_A_3(3VJS)
VDR_RAT
[Raw transfer]




10R_A_3(3VJT)
VDR_RAT
[Raw transfer]




M7E_A_3(5E7V)
VDRA_DANRE
[Raw transfer]




25 Blastp_CBE 79.9084%-129 - C1 -3X31 10.4 VDR_HUMAN
7 PsiBlast_PDB 78.7983%-123 - C1 -4G2I 11.8 VDR_HUMAN
18 PsiBlast_PDB 78.4583%-118 - C1 -3A3Z 11.8 VDR_HUMAN
35 Blastp_CBE 78.0783%-122 - C1 -5GT4 11.8 VDR_HUMAN
9 PsiBlast_PDB 77.8183%-124 - C1 -1S19 10.8 VDR_HUMAN
30 Blastp_CBE 76.2084%-123 - C1 -3AUQ 11.2 VDR_HUMAN
10 PsiBlast_PDB 76.0183%-122 - C1 -1TXI 10.4 VDR_HUMAN
37 Blastp_CBE 75.8783%-122 - C1 -3B0T 11.1 VDR_HUMAN
5 PsiBlast_PDB 75.8683%-121 - C1 -3KPZ 10.6 VDR_HUMAN
15 PsiBlast_PDB 75.4683%-118 - C1 -2HB8 11.5 VDR_HUMAN
20 PsiBlast_PDB 75.4483%-117 - C1 -3A78 10.8 VDR_HUMAN
26 Blastp_CBE 75.2884%-123 - C1 -3WWR 12.1 VDR_HUMAN
32 Blastp_CBE 75.1683%-123 - C1 -3A2J 10.5 VDR_HUMAN
8 PsiBlast_PDB 75.0383%-121 - C1 -1S0Z 11.4 VDR_HUMAN
21 Blastp_CBE 74.8984%-116 - C1 -3P8X 11.3 VDR_HUMAN
19 PsiBlast_PDB 74.8283%-117 - C1 -3A40 11.8 VDR_HUMAN
23 Blastp_CBE 74.6584%-127 - C1 -4ITE 12.9 VDR_HUMAN
45 Blastp_CBE 74.6283%-118 - C1 -3M7R 9.5 VDR_HUMAN
31 Blastp_CBE 74.4883%-123 - C1 -3A2I 10.6 VDR_HUMAN
6 PsiBlast_PDB 74.2183%-117 - C1 -3TKC 11.7 ?
17 PsiBlast_PDB 73.9283%-115 - C1 -3CS6 11.3 VDR_HUMAN
4 PsiBlast_PDB 73.6983%-116 - C1 -3OGT 11.6 VDR_HUMAN
14 PsiBlast_PDB 73.4483%-117 - C1 -2HB7 12.4 VDR_HUMAN
3 PsiBlast_PDB 73.0983%-115 - C1 -1IE9 11.2 VDR_HUMAN
24 Blastp_CBE 72.7984%-120 - C1 -3X36 10.6 VDR_HUMAN
28 Blastp_CBE 71.3984%-121 - C1 -3AX8 11.3 VDR_HUMAN
34 Blastp_CBE 71.1783%-118 - C1 -5YSY 11.8 VDR_HUMAN
22 Blastp_CBE 71.0384%-120 - C1 -4ITF 13.2 VDR_HUMAN
36 Blastp_CBE 70.9883%-119 - C1 -5V39 11.4 VDR_HUMAN
29 Blastp_CBE 70.9484%-121 - C1 -3AUR 11.1 VDR_HUMAN
33 Blastp_CBE 70.9283%-119 - C1 -5YT2 11.9 VDR_HUMAN
16 PsiBlast_PDB 70.6983%-115 - C1 -3CS4 11.6 VDR_HUMAN
39 Blastp_CBE 69.7683%-125 - C1 -3W0Y 13.5 VDR_HUMAN
43 Blastp_CBE 69.1483%-126 - C1 -3AZ2 11.3 VDR_HUMAN
41 Blastp_CBE 68.7683%-126 - C1 -3W0A 12.4 VDR_HUMAN
40 Blastp_CBE 68.6583%-126 - C1 -3W0C 12.7 VDR_HUMAN
27 Blastp_CBE 68.3984%-114 - C1 -3VHW 13.1 VDR_HUMAN
1 PsiBlast_PDB 67.9683%-124 - C1 -1DB1 10.8 VDR_HUMAN
42 Blastp_CBE 67.6783%-124 - C1 -3AZ3 12.5 VDR_HUMAN
12 PsiBlast_PDB 66.9383%-122 - C1 -2HAR 12.4 VDR_HUMAN
44 Blastp_CBE 66.7483%-123 - C1 -3AZ1 10.0 VDR_HUMAN
13 PsiBlast_PDB 65.7483%-119 - C1 -2HAS 12.1 VDR_HUMAN
38 Blastp_CBE 65.1783%-121 - C1 -3WGP 12.1 VDR_HUMAN
11 PsiBlast_PDB 64.9083%-118 - C1 -2HAM 12.2 VDR_HUMAN
2 PsiBlast_PDB 62.6683%-119 - C1 -1IE8 11.2 VDR_HUMAN
59 Blastp_CBE 52.4776%-135 - C1 -3VRW 11.9 VDR_RAT
65 Blastp_CBE 52.2276%-130 - C1 -2ZL9 11.9 VDR_RAT
48 Blastp_CBE 51.5376%-129 - C1 -1RK3 11.3 VDR_RAT
53 Blastp_CBE 51.3576%-125 - C1 -5XZH 12.0 VDR_RAT
51 Blastp_CBE 49.6976%-134 - C1 -5ZWH 7.4 VDR_RAT
57 Blastp_CBE 49.1576%-124 - C1 -5B41 11.4 VDR_RAT
60 Blastp_CBE 48.2776%-132 - C1 -3VRV 11.4 VDR_RAT
47 Blastp_CBE 48.0576%-123 - C1 -2O4J 11.6 VDR_RAT
62 Blastp_CBE 46.9476%-126 - C1 -3VJT 8.7 VDR_RAT
69 Blastp_CBE 46.7675%-131 - C1 -5GID 11.7 VDR_RAT
54 Blastp_CBE 46.6176%-125 - C1 -5XZF 12.7 VDR_RAT
46 Blastp_CBE 45.6076%-120 - C1 -2O4R 11.2 VDR_RAT
50 Blastp_CBE 45.0876%-119 - C1 -3A2H 10.5 VDR_RAT
56 Blastp_CBE 44.7576%-124 - C1 -5XPM 12.4 VDR_RAT
67 Blastp_CBE 44.3676%-130 - C1 -5GIE 12.5 VDR_RAT
64 Blastp_CBE 44.1676%-123 - C1 -2ZLA 12.0 VDR_RAT
61 Blastp_CBE 43.9176%-127 - C1 -3VRU 10.2 VDR_RAT
68 Blastp_CBE 43.7375%-131 - C1 -5GIC 10.5 VDR_RAT
49 Blastp_CBE 43.3676%-120 - C1 -1RJK 11.5 VDR_RAT
52 Blastp_CBE 43.3276%-123 - C1 -5ZWF 8.6 VDR_RAT
63 Blastp_CBE 42.9676%-120 - C1 -3VJS 8.8 VDR_RAT
58 Blastp_CBE 42.5276%-115 - C1 -4YNK 12.5 VDR_RAT
86 Blastp_CBE 31.4369%-139 - C1 -5LGA 12.8 VDRA_DANRE
101 Blastp_CBE 30.6668%-135 - C1 -4RUO 12.1 VDRA_DANRE
72 Blastp_CBE 30.5569%-129 - C1 -5OW7 9.9 VDRA_DANRE
85 Blastp_CBE 30.2669%-137 - C1 -6FO7 11.6 VDRA_DANRE
70 Blastp_CBE 29.9469%-131 - C1 -5OWD 10.3 VDRA_DANRE
55 Blastp_CBE 29.6676%-126 - C1 -5XUQ 12.1 VDR_RAT
77 Blastp_CBE 29.3569%-135 - C1 -3O1D 12.6 VDRA_DANRE
71 Blastp_CBE 29.3369%-131 * C1 *5OW9 10.3 VDRA_DANRE
82 Blastp_CBE 29.2669%-135 - C1 -6FOD 11.2 VDRA_DANRE
83 Blastp_CBE 28.8069%-136 - C1 -6FOB 12.2 VDRA_DANRE
66 Blastp_CBE 28.5276%-142 - C1 -5GIE 11.1 VDR_RAT
73 Blastp_CBE 28.4369%-134 - C1 -5NMA 10.9 VDRA_DANRE
74 Blastp_CBE 28.1869%-135 - C1 -5NKY 11.2 VDRA_DANRE
87 Blastp_CBE 28.0569%-135 - C1 -5E7V 11.5 VDRA_DANRE
100 Blastp_CBE 27.7768%-134 - C1 -4RUP 12.8 VDRA_DANRE
88 Blastp_CBE 27.5869%-136 - C1 -4IA7 12.4 VDRA_DANRE
89 Blastp_CBE 27.5669%-134 - C1 -4IA3 12.4 VDRA_DANRE
96 Blastp_CBE 27.3969%-132 - C1 -4G1Y 9.8 VDRA_DANRE
102 Blastp_CBE 26.9468%-130 - C1 -4RUJ 10.6 VDRA_DANRE
80 Blastp_CBE 26.5069%-134 - C1 -2HC4 10.9 VDRA_DANRE
90 Blastp_CBE 26.3569%-131 - C1 -4IA2 12.4 VDRA_DANRE
99 Blastp_CBE 25.9169%-132 - C1 -4FHH 10.0 VDRA_DANRE
75 Blastp_CBE 25.6969%-130 - C1 -4Q0A 7.5 VDRA_DANRE
98 Blastp_CBE 25.6569%-132 - C1 -4FHI 10.2 VDRA_DANRE
93 Blastp_CBE 25.2369%-135 - C1 -4G21 10.8 VDRA_DANRE
84 Blastp_CBE 25.1569%-133 - C1 -6FO9 10.8 VDRA_DANRE
91 Blastp_CBE 25.1169%-132 - C1 -4IA1 12.3 VDRA_DANRE
79 Blastp_CBE 25.1069%-133 - C1 -2HCD 12.5 VDRA_DANRE
76 Blastp_CBE 24.6169%-131 - C1 -3O1E 12.3 VDRA_DANRE
95 Blastp_CBE 24.1869%-132 - C1 -4G1Z 11.4 VDRA_DANRE
97 Blastp_CBE 24.0169%-133 - C1 -4G1D 11.1 VDRA_DANRE
94 Blastp_CBE 23.6469%-131 - C1 -4G20 11.1 VDRA_DANRE
92 Blastp_CBE 22.9669%-132 - C1 -4G2H 11.5 VDRA_DANRE
81 Blastp_CBE 21.3469%-128 - C1 -2HBH 10.7 VDRA_DANRE
78 Blastp_CBE 20.9069%-128 - C1 -3DR1 11.0 VDRA_DANRE