@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR5A1_STF1: (2019-04-25 )
MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKLETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGLAAGPPAGPLGDFGAPALPMAVPGAHGPLAGYLYPAFPGRAIKSEYPEPYASPPQPGLPYGYPEPFSGGPNVPELILQLLQLEPDEDQVRARILGCLQEPTKSRPDQPAAFGLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLALQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT

Atome Classification :

(8 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PIK_A_3(4QK4)
STF1_HUMAN
[Raw transfer]



PIZ_A_3(4QJR)
STF1_HUMAN
[Raw transfer]



P3A_D_4(1ZDU)

[Raw transfer]



PEF_F_6(1ZDT)
STF1_HUMAN
[Raw transfer]



P0E_C_3(1YOW)
STF1_HUMAN
[Raw transfer]



PEF_C_3(1YP0)
STF1_MOUSE
[Raw transfer]



P6L_D_4(1YOK)

[Raw transfer]



470_A_5(3PLZ)
NR5A2_HUMAN
[Raw transfer]
2 PsiBlast_PDB 94.2399%-160 - C1 -4QK4 9.2 STF1_HUMAN
1 PsiBlast_PDB 92.5399%-160 - C1 -4QJR 9.5 STF1_HUMAN
21 Blastp_CBE 84.6499%-160 - C1 -1ZDT 11.2 STF1_HUMAN
3 PsiBlast_PDB 79.5199%-175 - C1 -1YOW 10.1 STF1_HUMAN
4 PsiBlast_PDB 56.9893%-155 - C1 -1YP0 10.6 STF1_MOUSE
15 PsiBlast_PDB 44.8760% -93 - C1 -3PLZ 7.6 NR5A2_HUMAN
14 PsiBlast_PDB 38.5160% -49 * C1 *1YOK 9.2
13 PsiBlast_PDB 31.4260% -52 - C1 -1ZDU 10.4