@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR5A2_LRH1: (2019-04-25 )
MSSNSDTGDLQESLKHGLTPIGAGLPDRHGSPIPARGRLVMLPKVETEALGLARSHGEQGQMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKRA

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P3A_D_4(1ZDU)

[Raw transfer]



PIK_A_3(4QK4)
STF1_HUMAN
[Raw transfer]



PIZ_A_3(4RWV)

[Raw transfer]



EPH_B_5(4DOR)

[Raw transfer]



EPH_A_5(4ONI)
NR5A2_HUMAN
[Raw transfer]



EPH_G_22(4PLE)

[Raw transfer]



EPH_E_5(1YUC)
NR5A2_HUMAN
[Raw transfer]



EPH_C_13(4PLE)
NR5A2_HUMAN
[Raw transfer]



EPH_E_16(4PLE)
NR5A2_HUMAN
[Raw transfer]



P6L_D_4(1YOK)

[Raw transfer]



EPH_A_9(4PLE)
NR5A2_HUMAN
[Raw transfer]



P6L_B_9(4ONI)

[Raw transfer]



EPH_F_6(1YUC)

[Raw transfer]



P0E_C_3(1YOW)
STF1_HUMAN
[Raw transfer]



PEF_C_3(1YP0)
STF1_MOUSE
[Raw transfer]



PEF_F_6(1ZDT)
STF1_HUMAN
[Raw transfer]



PIZ_A_3(4QJR)
STF1_HUMAN
[Raw transfer]



PLC_A_6(4DOS)

[Raw transfer]



71W_A_3(5SYZ)

[Raw transfer]



470_A_5(3PLZ)
NR5A2_HUMAN
[Raw transfer]



RJW_A_3(5L11)

[Raw transfer]



RJW_A_3(5UNJ)

[Raw transfer]



470_B_7(3PLZ)

[Raw transfer]
1 PsiBlast_PDB 87.9699%-160 - C1 -1YUC 10.5 NR5A2_HUMAN
10 PsiBlast_PDB 87.7299%-170 - C1 -1YOK 11.7
26 Blastp_CBE 87.0699%-159 - C1 -4PLE 11.8 NR5A2_HUMAN
13 PsiBlast_PDB 85.9799%-156 - C1 -4DOS 9.7
25 Blastp_CBE 85.6399%-158 - C1 -4PLE 12.0 NR5A2_HUMAN
3 PsiBlast_PDB 85.32100%-155 - C1 -4ONI 10.7 NR5A2_HUMAN
7 PsiBlast_PDB 84.8599%-155 - C1 -4PLE 11.6 NR5A2_HUMAN
12 PsiBlast_PDB 84.5299%-161 - C1 -5SYZ 7.8
24 Blastp_CBE 84.3599%-155 - C1 -4PLE 12.1
27 Blastp_CBE 83.7099%-157 - C1 -3PLZ 8.6
22 Blastp_CBE 83.5499%-154 - C1 -1YUC 11.1
8 PsiBlast_PDB 83.1899%-164 - C1 -5L11 8.1
21 Blastp_CBE 82.8899%-150 * C1 *4DOR 11.4
23 Blastp_CBE 82.04100%-148 - C1 -4ONI 11.2
5 PsiBlast_PDB 81.76100%-166 - C1 -1ZDU 12.2
4 PsiBlast_PDB 81.4499%-148 - C1 -4RWV 10.6
11 PsiBlast_PDB 80.7199%-166 - C1 -3PLZ 8.2 NR5A2_HUMAN
9 PsiBlast_PDB 76.7499%-172 - C1 -5UNJ 8.2
30 Blastp_CBE 35.7161%-162 - C1 -1YOW 9.8 STF1_HUMAN
20 PsiBlast_PDB 32.3760%-146 - C1 -4QK4 9.0 STF1_HUMAN
19 PsiBlast_PDB 31.1760%-146 - C1 -4QJR 9.4 STF1_HUMAN
29 Blastp_CBE 29.3661%-145 - C1 -1ZDT 11.2 STF1_HUMAN
18 PsiBlast_PDB 28.9561%-141 - C1 -1YP0 11.3 STF1_MOUSE