@TOME V3
(Feb 2022)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR3C3_PRGR: (2019-08-20 )
MTELKAKGPRAPHVAGGPPSPEVGSPLLCRPAAGPFPGSQTSDTLPEVSAIPISLDGLLFPRPCQGQDPSDEKTQDQQSLSDVEGAYSRAEATRGAGGSSSSPPEKDSGLLDSVLDTLLAPSGPGQSQPSPPACEVTSSWCLFGPELPEDPPAAPATQRVLSPLMSRSGCKVGDSSGTAAAHKVLPRGLSPARQLLLPASESPHWSGAPVKPSPQAAAVEVEEEDGSESEESAGPLLKGKPRALGGAAAGGGAAAVPPGAAAGGVALVPKEDSRFSAPRVALVEQDAPMAPGRSPLATTVMDFIHVPILPLNHALLAARTRQLLEDESYDGGAGAASAFAPPRSSPCASSTPVAVGDFPDCAYPPDAEPKDDAYPLYSDFQPPALKIKEEEEGAEASARSPRSYLVAGANPAAFPDFPLGPPPPLPPRATPSRPGEAAVTAAPASASVSSASSSGSTLECILYKAEGAPPQQGPFAPPPCKAPGASGCLLPRDGLPSTSASAAAAGAAPALYPALGLNGLPQLGYQAAVLKEGLPQVYPPYLNYLRPDSEASQSPQYSFESLPQKICLICGDEASGCHYGVLTCGSCKVFFKRAMEGQHNYLCAGRNDCIVDKIRRKNCPACRLRKCCQAGMVLGGRKFKKFNKVRVVRALDAVALPQPVGVPNESQALSQRFTFSPGQDIQLIPPLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALSVEFPEMMSEVIAAQLPKILAGMVKPLLFHKK

Atome Classification :

(45 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

A2K_B_5(4APU)

[Raw transfer]




AS0_B_5(4A2J)

[Raw transfer]




AS0_A_3(4A2J)
PRGR_HUMAN
[Raw transfer]




STR_A_3(1A28)
PRGR_HUMAN
[Raw transfer]




T98_E_5(1ZUC)

[Raw transfer]




R18_A_3(1E3K)
PRGR_HUMAN
[Raw transfer]




2S0_A_3(4OAR)

[Raw transfer]




R18_B_4(1E3K)

[Raw transfer]




STR_B_4(1A28)

[Raw transfer]




486_A_3(2W8Y)
PRGR_HUMAN
[Raw transfer]




AS4_A_4(2Q1H)
?
[Raw transfer]




NDR_D_4(1SQN)

[Raw transfer]




WOW_A_3(3KBA)
PRGR_HUMAN
[Raw transfer]




NOG_B_4(3D90)

[Raw transfer]




1CA_A_3(2Q3Y)
?
[Raw transfer]




AS0_C_3(2OVM)

[Raw transfer]




T98_D_4(1ZUC)
PRGR_HUMAN
[Raw transfer]




MOF_A_4(1SR7)
PRGR_HUMAN
[Raw transfer]




OR8_A_3(4APU)
PRGR_HUMAN
[Raw transfer]




AS0_A_3(2OVH)

[Raw transfer]




NDR_C_3(1SQN)
PRGR_HUMAN
[Raw transfer]




1CA_A_2(4FNE)
?
[Raw transfer]




ORC_B_8(3ZRB)

[Raw transfer]




NOG_A_3(3D90)
PRGR_HUMAN
[Raw transfer]




NDR_B_5(2W8Y)

[Raw transfer]




1CA_B_7(3RY9)
?
[Raw transfer]




1CA_A_4(3RY9)
?
[Raw transfer]




STR_A_3(4FN9)
?
[Raw transfer]




WOW_B_5(3KBA)

[Raw transfer]




ORB_A_3(3ZRA)
PRGR_HUMAN
[Raw transfer]




MOF_B_5(1SR7)

[Raw transfer]




OR8_A_3(3ZR7)
PRGR_HUMAN
[Raw transfer]




OR8_B_10(3ZR7)

[Raw transfer]




30X_B_4(3G8O)

[Raw transfer]




30X_A_3(3G8O)
PRGR_HUMAN
[Raw transfer]




GKK_B_9(3HQ5)

[Raw transfer]




GKK_A_7(3HQ5)
PRGR_HUMAN
[Raw transfer]




OR8_A_3(3ZRB)
PRGR_HUMAN
[Raw transfer]




ORB_B_5(3ZRA)

[Raw transfer]




EDO_A_9(3G97)
GCR_RAT
[Raw transfer]




486_A_4(4LTW)
?
[Raw transfer]




EDO_A_8(3G9M)
GCR_RAT
[Raw transfer]




EDO_A_9(3G97)

[Raw transfer]




EDO_A_8(3G9M)

[Raw transfer]




CPS_B_11(4FN9)
?
[Raw transfer]




13 PsiBlast_PDB 84.85100%-158 - C1 -1E3K 7.1 PRGR_HUMAN
22 Blastp_CBE 84.61100%-160 - C1 -3G8O 6.7
9 PsiBlast_PDB 84.45100%-155 - C1 -1A28 7.9 PRGR_HUMAN
16 PsiBlast_PDB 84.09100%-159 - C1 -1ZUC 8.0
29 Blastp_CBE 84.08100%-159 - C1 -3HQ5 9.5
35 Blastp_CBE 83.27100%-159 - C1 -3KBA 7.8
25 Blastp_CBE 83.15100%-157 * C1 *3ZRB 6.6
32 Blastp_CBE 83.14100%-158 - C1 -1SR7 10.0
4 PsiBlast_PDB 82.88100%-157 - C1 -3ZR7 7.5 PRGR_HUMAN
7 PsiBlast_PDB 82.86100%-157 - C1 -4A2J 9.5 PRGR_HUMAN
33 Blastp_CBE 82.53100%-158 - C1 -1E3K 7.3
24 Blastp_CBE 82.22100%-153 - C1 -4A2J 8.9
5 PsiBlast_PDB 81.79100%-156 - C1 -3ZRA 7.3 PRGR_HUMAN
23 Blastp_CBE 80.80100%-155 - C1 -4APU 12.0
3 PsiBlast_PDB 80.80100%-154 - C1 -2W8Y 10.0 PRGR_HUMAN
34 Blastp_CBE 80.74100%-153 - C1 -1A28 8.1
2 PsiBlast_PDB 80.59100%-153 - C1 -3G8O 6.8 PRGR_HUMAN
8 PsiBlast_PDB 80.49100%-150 - C1 -4APU 6.5 PRGR_HUMAN
31 Blastp_CBE 80.36100%-150 - C1 -1ZUC 7.8 PRGR_HUMAN
15 PsiBlast_PDB 80.17100%-153 - C1 -1SR7 10.6 PRGR_HUMAN
28 Blastp_CBE 79.60100%-149 - C1 -2W8Y 7.6
30 Blastp_CBE 79.44100%-155 - C1 -3D90 8.1
6 PsiBlast_PDB 79.40100%-148 - C1 -3ZRB 7.5 PRGR_HUMAN
26 Blastp_CBE 78.39100%-147 - C1 -3ZRA 7.2
27 Blastp_CBE 78.12100%-152 - C1 -3ZR7 7.6
18 PsiBlast_PDB 77.79100%-166 - C1 -3KBA 8.4 PRGR_HUMAN
21 Blastp_CBE 77.53100%-153 - C1 -1SQN 7.6
12 PsiBlast_PDB 76.81100%-164 - C1 -3HQ5 9.6 PRGR_HUMAN
10 PsiBlast_PDB 75.37100%-152 - C1 -2OVH 8.7
11 PsiBlast_PDB 73.95100%-151 - C1 -2OVM 8.0
1 PsiBlast_PDB 72.10100%-154 - C1 -1SQN 7.5 PRGR_HUMAN
17 PsiBlast_PDB 70.75100%-146 - C1 -4OAR 9.1
36 Blastp_CBE 69.9368%-151 - C1 -4LTW 3.6 ?
14 PsiBlast_PDB 69.82100%-149 - C1 -3D90 7.7 PRGR_HUMAN
39 Blastp_CBE 68.5566%-157 - C1 -2Q1H 8.3 ?
40 Blastp_CBE 67.1666%-153 - C1 -2Q3Y 8.5 ?
37 Blastp_CBE 66.0668%-149 - C1 -4FN9 3.5 ?
41 Blastp_CBE 65.7365%-150 - C1 -3RY9 8.8 ?
20 PsiBlast_PDB 65.5967%-146 - C1 -4FN9 7.3 ?
19 PsiBlast_PDB 64.3967%-145 - C1 -4FNE 8.0 ?
42 Blastp_CBE 62.5465%-146 - C1 -3RY9 8.8 ?
111 Blastp_CBE 20.3186%-183 - C1 -3G97 2.8
112 Blastp_CBE 10.1586%-161 - C1 -3G97 2.7 GCR_RAT
104 Blastp_CBE 9.4286%-158 - C1 -3G9M 3.1 GCR_RAT
103 Blastp_CBE 7.8086%-156 - C1 -3G9M 3.1