@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR4A2_NURR1: (2019-08-20 )
MPCVQAQYGSSPQGASPASQSYSYHSSGEYSSDFLTPEFVKFSMDLTNTEITATTSLPSFSTFMDNYSTGYDVKPPCLYQMPLSGQQSSIKVEDIQMHNYQQHSHLPPQSEEMMPHSGSVYYKPSSPPTPTTPGFQVQHSPMWDDPGSLHNFHQNYVATTHMIEQRKTPVSRLSLFSFKQSPPGTPVSSCQMRFDGPLHVPMNPEPAGSHHVVDGQTFAVPNPIRKPASMGFPGLQIGHASQLLDTQVPSPPSRGSPSNEGLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQEPSPPSPPVSLISALVRAHVDSNPAMTSLDYSRFQANPDYQMSGDDTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVEGKLIFCNGVVLHRLQCVRGFGEWIDSIVEFSSNLQNMNIDISAFSCIAALAMVTERHGLKEPKRVEELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPAIIDKLFLDTLPF

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_5(4KZJ)
NR4A1_HUMAN
[Raw transfer]



GOL_A_5(4RZG)
NR4A1_HUMAN
[Raw transfer]



GOL_A_4(4RE8)
NR4A1_HUMAN
[Raw transfer]



GOL_B_3(4RZG)

[Raw transfer]



GOL_A_5(4KZI)
NR4A1_HUMAN
[Raw transfer]



GOL_B_3(4RE8)

[Raw transfer]



GOL_A_5(4KZM)
NR4A1_HUMAN
[Raw transfer]



GOL_A_5(4RZF)
NR4A1_HUMAN
[Raw transfer]



TMY_A_4(3V3Q)
NR4A1_HUMAN
[Raw transfer]



GOL_B_3(4RZE)

[Raw transfer]



GOL_A_4(4WHF)
NR4A1_HUMAN
[Raw transfer]



GOL_B_3(4RZF)

[Raw transfer]



GOL_A_9(4JGV)
NR4A1_HUMAN
[Raw transfer]



GOL_A_5(4REE)
NR4A1_HUMAN
[Raw transfer]



GOL_B_3(4KZJ)

[Raw transfer]



GOL_B_3(4WHF)

[Raw transfer]



GOL_A_5(3V3E)
NR4A1_HUMAN
[Raw transfer]



GOL_B_3(4KZM)

[Raw transfer]



GOL_B_3(4REE)

[Raw transfer]



GOL_B_3(4REF)

[Raw transfer]



GOL_B_10(4JGV)

[Raw transfer]



GOL_A_5(4RZE)
NR4A1_HUMAN
[Raw transfer]



GOL_A_4(4WHG)
NR4A1_HUMAN
[Raw transfer]



GOL_B_3(4KZI)

[Raw transfer]



GOL_B_3(4WHG)

[Raw transfer]



GOL_B_3(3V3E)

[Raw transfer]



GOL_A_6(4REF)
NR4A1_HUMAN
[Raw transfer]
18 PsiBlast_PDB 80.0964%-166 - C1 -4RZF 1.0
34 Blastp_CBE 79.9665%-170 - C1 -4KZI 0.1 NR4A1_HUMAN
14 PsiBlast_PDB 79.9165%-166 - C1 -4REE 0.4
8 PsiBlast_PDB 79.8965%-168 - C1 -3V3Q 3.7 NR4A1_HUMAN
9 PsiBlast_PDB 79.1465%-167 - C1 -4KZI 0.2
7 PsiBlast_PDB 78.6565%-163 - C1 -3V3E 2.5
36 Blastp_CBE 78.4465%-166 - C1 -3V3E 1.9 NR4A1_HUMAN
19 PsiBlast_PDB 78.4264%-169 - C1 -4RZE 0.1
37 Blastp_CBE 78.0665%-163 - C1 -4RZG Error NR4A1_HUMAN
12 PsiBlast_PDB 77.8765%-161 - C1 -4RZG 0.1
38 Blastp_CBE 77.8165%-162 - C1 -4REE 0.6 NR4A1_HUMAN
16 PsiBlast_PDB 77.7264%-170 - C1 -4KZJ 2.1
13 PsiBlast_PDB 77.4165%-168 - C1 -4RE8 0.1
33 Blastp_CBE 77.2765%-164 - C1 -4WHF 0.5 NR4A1_HUMAN
11 PsiBlast_PDB 77.1465%-162 - C1 -4WHG 2.1
31 Blastp_CBE 77.0365%-170 - C1 -4JGV 1.7
32 Blastp_CBE 76.8265%-163 - C1 -4WHG 0.2 NR4A1_HUMAN
43 Blastp_CBE 76.6665%-163 - C1 -4RZF 0.8 NR4A1_HUMAN
15 PsiBlast_PDB 76.6264%-164 - C1 -4KZM 2.2
40 Blastp_CBE 76.5065%-160 - C1 -4KZM 0.1 NR4A1_HUMAN
39 Blastp_CBE 75.5065%-161 - C1 -4RE8 0.3 NR4A1_HUMAN
17 PsiBlast_PDB 75.4764%-160 - C1 -4REF 2.1
42 Blastp_CBE 75.1165%-160 * C1 *4REF 2.2 NR4A1_HUMAN
44 Blastp_CBE 74.6064%-161 - C1 -4RZE 0.9 NR4A1_HUMAN
41 Blastp_CBE 74.5765%-159 - C1 -4KZJ 2.3 NR4A1_HUMAN
10 PsiBlast_PDB 73.8365%-159 - C1 -4WHF 0.2
6 PsiBlast_PDB 73.1465%-156 - C1 -4JGV 1.8 NR4A1_HUMAN