@TOME V3
(Feb 2022)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1A1_THRa: (2021-05-27 )
MEQKPSKVECGSDPEENSARSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQSSILYKGAAAEGRPGGSLGVHPEGQQLLGMHVVQGPQVRQLEQQLGEAGSLQGPVLQHQSPKSPQQRLLELLHRSGILHARAVCGEDDSSEADSPSSSEEEPEVCEDLAGNAASP

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

B72_A_2(3HZF)
THA_HUMAN
[Raw transfer]




B72_A_2(3ILZ)
THA_HUMAN
[Raw transfer]




G24_B_2(1Q4X)
THB_HUMAN
[Raw transfer]




IH5_A_2(1NAX)
THB_HUMAN
[Raw transfer]




PFA_C_3(1N46)
THB_HUMAN
[Raw transfer]




OEF_A_2(2J4A)
THB_HUMAN
[Raw transfer]




PFA_D_4(1N46)
THB_HUMAN
[Raw transfer]




B72_A_2(3IMY)
THB_HUMAN
[Raw transfer]




IH5_A_3(1NAV)
THA_HUMAN
[Raw transfer]




8HO_X_3(6KKB)
THB_HUMAN
[Raw transfer]




4HY_A_2(3JZB)
THA_HUMAN
[Raw transfer]




4HY_A_3(3D57)
THB_HUMAN
[Raw transfer]




T3_A_2(2H77)
THA_HUMAN
[Raw transfer]




T3_A_2(4LNW)
THA_HUMAN
[Raw transfer]




T3_A_2(2H79)
THA_HUMAN
[Raw transfer]




T3_A_3(4LNX)
THA_HUMAN
[Raw transfer]




8HO_A_3(6KNV)
THB_HUMAN
[Raw transfer]




8HO_A_3(6KKE)
THB_HUMAN
[Raw transfer]




4HY_A_4(2PIN)
THB_HUMAN
[Raw transfer]




8HO_A_3(6KNW)
THB_HUMAN
[Raw transfer]




T3_X_4(4ZO1)
THB_HUMAN
[Raw transfer]




T3_X_2(3GWS)
THB_HUMAN
[Raw transfer]




442_A_2(1R6G)
THB_HUMAN
[Raw transfer]




8HO_A_3(6KNU)
THB_HUMAN
[Raw transfer]




4HY_B_4(3D57)
THB_HUMAN
[Raw transfer]




T3_E_5(1BSX)
THB_HUMAN
[Raw transfer]




4HY_A_2(1NQ1)
THB_HUMAN
[Raw transfer]




4HY_B_6(2PIN)
THB_HUMAN
[Raw transfer]




T3_F_6(1BSX)
THB_HUMAN
[Raw transfer]




T3_X_8(1XZX)
THB_HUMAN
[Raw transfer]




4HY_A_3(1NQ2)
THB_HUMAN
[Raw transfer]




4HY_B_2(1NUO)
THB_HUMAN
[Raw transfer]




4HY_A_2(1NQ0)
THB_HUMAN
[Raw transfer]




T44_X_8(1Y0X)
THB_HUMAN
[Raw transfer]




4HY_A_2(3JZC)
THB_HUMAN
[Raw transfer]




6 PsiBlast_PDB 81.0599% -98 - C1 -3ILZ 8.2 THA_HUMAN
7 PsiBlast_PDB 79.0899% -94 - C1 -4LNW 8.1 THA_HUMAN
8 PsiBlast_PDB 78.4699% -94 - C1 -4LNX 8.1 THA_HUMAN
5 PsiBlast_PDB 77.2399% -96 - C1 -3JZB 7.8 THA_HUMAN
3 PsiBlast_PDB 75.7799% -96 - C1 -2H79 8.0 THA_HUMAN
1 PsiBlast_PDB 74.97100%-112 - C1 -1NAV 7.6 THA_HUMAN
4 PsiBlast_PDB 74.3099% -94 - C1 -3HZF 8.5 THA_HUMAN
2 PsiBlast_PDB 72.6499% -98 - C1 -2H77 8.4 THA_HUMAN
20 PsiBlast_PDB 66.5680%-105 - C1 -2J4A 8.5 THB_HUMAN
30 Blastp_CBE 64.5280%-106 - C1 -2PIN 8.1 THB_HUMAN
33 Blastp_CBE 63.8680%-112 - C1 -3D57 8.3 THB_HUMAN
25 Blastp_CBE 63.8680%-109 - C1 -6KNW 8.1 THB_HUMAN
32 Blastp_CBE 63.8580%-109 - C1 -3D57 7.9 THB_HUMAN
26 Blastp_CBE 62.8280%-109 - C1 -6KKB 8.4 THB_HUMAN
24 Blastp_CBE 62.7680%-108 * C1 *1NAX 7.9 THB_HUMAN
9 PsiBlast_PDB 61.2778%-102 - C1 -1NQ1 8.0 THB_HUMAN
31 Blastp_CBE 61.0380%-108 - C1 -2PIN 8.3 THB_HUMAN
13 PsiBlast_PDB 59.7078%-113 - C1 -1NUO 5.7 THB_HUMAN
11 PsiBlast_PDB 59.6578%-115 - C1 -1XZX 8.0 THB_HUMAN
28 Blastp_CBE 59.4980%-115 - C1 -6KNV 8.0 THB_HUMAN
14 PsiBlast_PDB 59.3679%-114 - C1 -1NQ0 8.0 THB_HUMAN
12 PsiBlast_PDB 58.1578%-110 - C1 -1Y0X 8.3 THB_HUMAN
27 Blastp_CBE 57.6380%-108 - C1 -4ZO1 8.2 THB_HUMAN
23 Blastp_CBE 57.5280%-110 - C1 -6KKE 6.9 THB_HUMAN
18 PsiBlast_PDB 57.0879%-102 - C1 -1NQ2 6.9 THB_HUMAN
34 Blastp_CBE 57.0680%-116 - C1 -6KNU 8.2 THB_HUMAN
17 PsiBlast_PDB 55.6479%-111 - C1 -3IMY 8.0 THB_HUMAN
19 PsiBlast_PDB 55.6179%-103 - C1 -1N46 8.8 THB_HUMAN
15 PsiBlast_PDB 53.1579%-119 - C1 -3GWS 8.1 THB_HUMAN
22 Blastp_CBE 52.5279%-124 - C1 -1N46 8.7 THB_HUMAN
16 PsiBlast_PDB 49.1378%-120 - C1 -1R6G 8.6 THB_HUMAN
29 Blastp_CBE 48.5580%-121 - C1 -1Q4X 8.5 THB_HUMAN
21 Blastp_CBE 46.6380%-117 - C1 -1BSX 7.7 THB_HUMAN
10 PsiBlast_PDB 46.3180%-118 - C1 -1BSX 7.6 THB_HUMAN
35 Blastp_CBE 5.1179% -15 - C1 -3JZC 4.0 THB_HUMAN