@TOME V3
(Feb 2022)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR2A2_HNF4g: (2021-05-27 )
MNTTDNGVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGSSTDINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMYKDILLLGNNYVIHRNSCEVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEMLLGGASNDGSHLHHPMHPHLSQDPLTGQTILLGPMSTLVHADQISTPETPLPSPPQGSGQEQYKIAANQASVISHQHLSKQKQL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MYR_C_3(1PZL)
HNF4A_HUMAN
[Raw transfer]



MYR_A_3(3FS1)
HNF4A_HUMAN
[Raw transfer]



DAO_E_5(1M7W)
HNF4A_RAT
[Raw transfer]



PLM_B_2(1LV2)
HNF4G_HUMAN
[Raw transfer]



DAO_F_6(1M7W)
HNF4A_RAT
[Raw transfer]



DAO_G_7(1M7W)
HNF4A_RAT
[Raw transfer]



DAO_H_8(1M7W)
HNF4A_RAT
[Raw transfer]
21 Blastp_CBE 90.0883% -83 - C1 -4IQR - HNF4A_HUMAN -
23 Blastp_CBE 85.1383% -82 - C1 -4IQR - HNF4A_HUMAN -
22 Blastp_CBE 84.7683% -76 - C1 -4IQR - HNF4A_HUMAN -
1 PsiBlast_PDB 79.4482% -77 - C1 -4IQR - HNF4A_HUMAN -
2 PsiBlast_PDB 62.08100%-147 - C1 -1LV2 6.5 HNF4G_HUMAN
9 PsiBlast_PDB 56.5742% -83 - C1 -3E00 - RXRA_HUMAN -
10 PsiBlast_PDB 55.3642% -23 - C1 -4NQA - RXRA_HUMAN -
6 PsiBlast_PDB 54.6478% -74 - C1 -1PZL 6.1 HNF4A_HUMAN
7 PsiBlast_PDB 53.3380% -75 - C1 -3FS1 5.0 HNF4A_HUMAN
8 PsiBlast_PDB 51.5642% -32 - C1 -3DZU - RXRA_HUMAN -
3 PsiBlast_PDB 47.5676% -80 - C1 -1M7W 5.2 HNF4A_RAT
24 Blastp_CBE 46.2277% -83 - C1 -1M7W 4.7 HNF4A_RAT
11 PsiBlast_PDB 45.8742% -24 - C1 -5UAN - RXRA_HUMAN -
26 Blastp_CBE 44.1877% -78 - C1 -1M7W 4.3 HNF4A_RAT
4 PsiBlast_PDB 43.6178% -82 - C1 -6CHT - HNF4A_HUMAN -
32 Blastp_CBE 42.9479% -89 - C1 -6CHT - HNF4A_HUMAN -
30 Blastp_CBE 42.1079% -86 * C1 *6CHT - HNF4A_HUMAN -
25 Blastp_CBE 40.5577% -81 - C1 -1M7W 4.6 HNF4A_RAT
33 Blastp_CBE 36.5479% -87 - C1 -6CHT - HNF4A_HUMAN -
27 Blastp_CBE 35.9579% -92 - C1 -6CHT - HNF4A_HUMAN -