@TOME V3
(Feb 2022)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR2F1_COT1: (2021-05-27 )
MAMVVSSWRDPQDDVAGGNPGGPNPAAQAARGGGGGAGEQQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

9HF_A_5(5ZQU)
RXRA_HUMAN
[Raw transfer]
1 PsiBlast_PDB 78.6996%-171 - C1 -3CJW - COT2_HUMAN -
2 PsiBlast_PDB 72.9044% -66 - C1 -3DZU - RXRA_HUMAN -
4 PsiBlast_PDB 72.5744% -16 - C1 -4NQA - RXRA_HUMAN -
3 PsiBlast_PDB 71.9544% -68 - C1 -3E00 - RXRA_HUMAN -
5 PsiBlast_PDB 65.8244% -70 - C1 -5UAN - RXRA_HUMAN -
6 PsiBlast_PDB 61.1038% -48 * C1 *4IQR - HNF4A_HUMAN -
10 PsiBlast_PDB 57.6145%-179 - C1 -4LOG - MALE_ECOLI (first) -
8 PsiBlast_PDB 49.8838% -54 - C1 -6HN6 - RXRA_HUMAN -
11 PsiBlast_PDB 45.6243% -19 - C1 -1DKF - RXRA_MOUSE -
16 PsiBlast_PDB 44.8342% -29 - C1 -3E94 - RXRA_HUMAN -
12 PsiBlast_PDB 44.2942% -23 - C1 -4OC7 - RXRA_HUMAN -
17 PsiBlast_PDB 41.5242% -27 - C1 -3KWY - RXRA_HUMAN -
14 PsiBlast_PDB 37.9042% -18 - C1 -6JNO - RXRA_HUMAN -
19 PsiBlast_PDB 37.7742% -17 - C1 -4N8R - RXRA_HUMAN -
13 PsiBlast_PDB 37.0442% -14 - C1 -5ZQU 5.2 RXRA_HUMAN
20 PsiBlast_PDB 36.7142% -16 - C1 -5TBP - RXRA_HUMAN -
18 PsiBlast_PDB 36.3142% -11 - C1 -4N5G - RXRA_HUMAN -
7 PsiBlast_PDB 30.3943% -13 - C1 -2GL8 - RXRG_HUMAN -
9 PsiBlast_PDB 28.5344% -42 - C1 -3EYB - ? -
15 PsiBlast_PDB 18.4995%-104 - C1 -2EBL - COT1_HUMAN -