@TOME V3
(Feb 2022)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR4A2_NURR1: (2021-05-27 )
MPCVQAQYGSSPQGASPASQSYSYHSSGEYSSDFLTPEFVKFSMDLTNTEITATTSLPSFSTFMDNYSTGYDVKPPCLYQMPLSGQQSSIKVEDIQMHNYQQHSHLPPQSEEMMPHSGSVYYKPSSPPTPTTPGFQVQHSPMWDDPGSLHNFHQNYVATTHMIEQRKTPVSRLSLFSFKQSPPGTPVSSCQMRFDGPLHVPMNPEPAGSHHVVDGQTFAVPNPIRKPASMGFPGLQIGHASQLLDTQVPSPPSRGSPSNEGLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQEPSPPSPPVSLISALVRAHVDSNPAMTSLDYSRFQANPDYQMSGDDTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVEGKLIFCNGVVLHRLQCVRGFGEWIDSIVEFSSNLQNMNIDISAFSCIAALAMVTERHGLKEPKRVEELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPAIIDKLFLDTLPF

Atome Classification :

(37 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_B_3(4RE8)

[Raw transfer]




GOL_B_3(4RZE)

[Raw transfer]




GOL_A_4(4RE8)
NR4A1_HUMAN
[Raw transfer]




GOL_A_5(4KZI)
NR4A1_HUMAN
[Raw transfer]




GOL_B_3(4RZG)

[Raw transfer]




GOL_B_3(4RZF)

[Raw transfer]




GOL_A_5(4RZG)
NR4A1_HUMAN
[Raw transfer]




GOL_A_5(4KZM)
NR4A1_HUMAN
[Raw transfer]




GOL_A_5(4REE)
NR4A1_HUMAN
[Raw transfer]




GOL_B_3(3V3E)

[Raw transfer]




GOL_A_4(4WHF)
NR4A1_HUMAN
[Raw transfer]




GOL_B_3(4KZM)

[Raw transfer]




GOL_B_3(4WHF)

[Raw transfer]




GOL_A_5(3V3E)
NR4A1_HUMAN
[Raw transfer]




GOL_A_9(4JGV)
NR4A1_HUMAN
[Raw transfer]




GOL_A_5(4RZF)
NR4A1_HUMAN
[Raw transfer]




GOL_B_3(4WHG)

[Raw transfer]




TMY_A_4(3V3Q)
NR4A1_HUMAN
[Raw transfer]




GOL_A_4(4WHG)
NR4A1_HUMAN
[Raw transfer]




GOL_B_3(4KZJ)

[Raw transfer]




GOL_A_5(4KZJ)
NR4A1_HUMAN
[Raw transfer]




GOL_A_5(4RZE)
NR4A1_HUMAN
[Raw transfer]




GOL_B_3(4REF)

[Raw transfer]




GOL_B_10(4JGV)

[Raw transfer]




GOL_B_3(4KZI)

[Raw transfer]




GOL_B_3(4REE)

[Raw transfer]




GOL_A_6(4REF)
NR4A1_HUMAN
[Raw transfer]




3 PsiBlast_PDB 94.95100%-184 - C1 -5YD6 - NR4A2_HUMAN -
25 Blastp_CBE 94.52100%-174 - C1 -5Y41 - -
2 PsiBlast_PDB 94.35100%-172 - C1 -5Y41 - NR4A2_HUMAN -
24 Blastp_CBE 94.33100%-185 - C1 -5YD6 - NR4A2_HUMAN -
4 PsiBlast_PDB 93.4499%-175 - C1 -1OVL - NR4A2_HUMAN -
22 Blastp_CBE 93.15100%-177 - C1 -5YD6 - -
21 Blastp_CBE 91.56100%-173 - C1 -6DDA - -
23 Blastp_CBE 89.96100%-172 - C1 -5YD6 - NR4A2_HUMAN -
1 PsiBlast_PDB 89.78100%-162 - C1 -6DDA - NR4A2_HUMAN -
26 Blastp_CBE 88.3499%-169 - C1 -6DDA - NR4A2_HUMAN -
18 PsiBlast_PDB 80.9764%-166 - C1 -4RZF 1.0
14 PsiBlast_PDB 80.8165%-166 - C1 -4REE 0.4
8 PsiBlast_PDB 80.6865%-168 - C1 -3V3Q 3.7 NR4A1_HUMAN
36 Blastp_CBE 80.6665%-170 - C1 -4KZI 0.1 NR4A1_HUMAN
9 PsiBlast_PDB 80.0165%-167 - C1 -4KZI 0.2
7 PsiBlast_PDB 79.6765%-163 - C1 -3V3E 2.5
38 Blastp_CBE 79.3665%-166 - C1 -3V3E 1.9 NR4A1_HUMAN
19 PsiBlast_PDB 79.1764%-169 - C1 -4RZE 0.1
39 Blastp_CBE 79.0765%-163 - C1 -4RZG Error NR4A1_HUMAN
12 PsiBlast_PDB 79.0165%-161 - C1 -4RZG 0.1
40 Blastp_CBE 78.8865%-162 - C1 -4REE 0.6 NR4A1_HUMAN
16 PsiBlast_PDB 78.4464%-170 - C1 -4KZJ 2.1
35 Blastp_CBE 78.2465%-164 - C1 -4WHF 0.5 NR4A1_HUMAN
13 PsiBlast_PDB 78.2265%-168 - C1 -4RE8 0.1
11 PsiBlast_PDB 78.2265%-162 - C1 -4WHG 2.1
34 Blastp_CBE 77.8565%-163 - C1 -4WHG 0.2 NR4A1_HUMAN
31 Blastp_CBE 77.7365%-170 - C1 -4JGV 1.7
45 Blastp_CBE 77.7065%-163 * C1 *4RZF 0.8 NR4A1_HUMAN
42 Blastp_CBE 77.6765%-160 - C1 -4KZM 0.1 NR4A1_HUMAN
15 PsiBlast_PDB 77.6364%-164 - C1 -4KZM 2.2
17 PsiBlast_PDB 76.6464%-160 - C1 -4REF 2.1
41 Blastp_CBE 76.6265%-161 - C1 -4RE8 0.3 NR4A1_HUMAN
44 Blastp_CBE 76.2765%-160 - C1 -4REF 2.2 NR4A1_HUMAN
43 Blastp_CBE 75.7965%-159 - C1 -4KZJ 2.3 NR4A1_HUMAN
46 Blastp_CBE 75.7364%-161 - C1 -4RZE 0.9 NR4A1_HUMAN
10 PsiBlast_PDB 75.0665%-159 - C1 -4WHF 0.2
6 PsiBlast_PDB 74.5165%-156 - C1 -4JGV 1.8 NR4A1_HUMAN