@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1B1_RARa: (2019-04-19 )
MASNSSSCPTPGGGHLNGYPVPPYAFFFPPMLGGLSPPGALTTLQHQLPVSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGLDTLSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP

Atome Classification :

(8 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

REA_B_5(3A9E)
RARA_HUMAN
[Raw transfer]



BMS_C_3(1DKF)
RARA_HUMAN
[Raw transfer]



EQO_B_5(3KMZ)
RARA_HUMAN
[Raw transfer]



EQN_A_3(3KMR)
RARA_HUMAN
[Raw transfer]



EQO_A_10(3KMZ)
RARA_HUMAN
[Raw transfer]



6Q7_A_2(5K13)
RARA_HUMAN
[Raw transfer]



LUF_C_6(4DQM)
RARA_HUMAN
[Raw transfer]



LUF_A_5(4DQM)
RARA_HUMAN
[Raw transfer]
8 PsiBlast_PDB 60.01100%-141 - C1 -1DKF 10.5 RARA_HUMAN
3 PsiBlast_PDB 55.88100%-131 - C1 -3A9E 8.2 RARA_HUMAN
22 Blastp_CBE 53.56100%-134 - C1 -4DQM 5.9 RARA_HUMAN
6 PsiBlast_PDB 52.46100%-132 - C1 -5K13 11.6 RARA_HUMAN
9 PsiBlast_PDB 52.32100%-130 - C1 -4DQM 5.6 RARA_HUMAN
4 PsiBlast_PDB 46.85100%-128 - C1 -3KMR 9.9 RARA_HUMAN
5 PsiBlast_PDB 22.95100%-126 - C1 -3KMZ 11.5 RARA_HUMAN
21 Blastp_CBE 20.72100%-126 - C1 -3KMZ 11.2 RARA_HUMAN