@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1B2_RARb: (2019-04-19 )
MTTSGHACPVPAVNGHMTHYPATPYPLLFPPVIGGLSLPPLHGLHGHPPPSGCSTPSPATIETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVSQSPLVQ

Atome Classification :

(14 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

JYH_B_6(4JYH)
RARB_HUMAN
[Raw transfer]




1NY_B_7(4JYG)
RARB_HUMAN
[Raw transfer]




1NY_A_5(4JYG)
RARB_HUMAN
[Raw transfer]




REA_L_12(1XDK)
RARB_MOUSE
[Raw transfer]




TTB_B_6(4DM6)
RARB_HUMAN
[Raw transfer]




JYH_A_5(4JYH)
RARB_HUMAN
[Raw transfer]




TTB_A_5(4DM6)
RARB_HUMAN
[Raw transfer]




REA_J_10(1XDK)
RARB_MOUSE
[Raw transfer]




REA_B_12(5UAN)
RARB_HUMAN
[Raw transfer]




REA_A_5(4DM8)
RARB_HUMAN
[Raw transfer]




JYI_A_5(4JYI)
RARB_HUMAN
[Raw transfer]




TTB_B_2(1XAP)
RARB_HUMAN
[Raw transfer]




REA_B_6(4DM8)
RARB_HUMAN
[Raw transfer]




JYI_B_6(4JYI)
RARB_HUMAN
[Raw transfer]




1 PsiBlast_PDB 81.5198%-126 - C1 -5UAN 7.8 RARB_HUMAN
8 PsiBlast_PDB 51.3899%-141 - C1 -4JYH 10.2 RARB_HUMAN
25 Blastp_CBE 50.3999%-138 - C1 -4JYH 10.3 RARB_HUMAN
23 Blastp_CBE 49.95100%-133 - C1 -4DM6 10.2 RARB_HUMAN
9 PsiBlast_PDB 49.9099%-137 - C1 -4JYI 11.4 RARB_HUMAN
7 PsiBlast_PDB 49.5999%-142 - C1 -4JYG 11.1 RARB_HUMAN
24 Blastp_CBE 48.4599%-135 * C1 *4JYI 11.8 RARB_HUMAN
22 Blastp_CBE 41.09100%-129 - C1 -4DM8 8.5 RARB_HUMAN
26 Blastp_CBE 41.0299%-129 - C1 -4JYG 11.2 RARB_HUMAN
5 PsiBlast_PDB 39.50100%-130 - C1 -4DM6 10.2 RARB_HUMAN
6 PsiBlast_PDB 37.80100%-131 - C1 -4DM8 8.5 RARB_HUMAN
4 PsiBlast_PDB 33.10100%-133 - C1 -1XAP 10.2 RARB_HUMAN
3 PsiBlast_PDB 31.0298%-124 - C1 -1XDK 8.8 RARB_MOUSE
21 Blastp_CBE 30.1099%-125 - C1 -1XDK 8.8 RARB_MOUSE