@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1C1_PPARa: (2019-04-19 )
MVDTESPLCPLSPLEAGDLESPLSEEFLQEMGNIQEISQSIGEDSSGSFGFTEYQYLGSCPGSDGSVITDTLSPASSPSSVTYPVVPGSVDESPSGALNIECRICGDKASGYHYGVHACEGCKGFFRRTIRLKLVYDKCDRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEILTCEHDIEDSETADLKSLAKRIYEAYLKNFNMNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQNKEAEVRIFHCCQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAALHPLLQEIYRDMY

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

S44_A_2(2ZNN)
PPARA_HUMAN
[Raw transfer]



Y1N_A_2(4CI4)
PPARA_HUMAN
[Raw transfer]



NKS_A_3(3KDU)
PPARA_HUMAN
[Raw transfer]



IL2_A_3(3SP6)
PPARA_HUMAN
[Raw transfer]



13M_A_2(3VI8)
PPARA_HUMAN
[Raw transfer]



MMB_A_5(2NPA)
PPARA_HUMAN
[Raw transfer]



RO7_A_3(3G8I)
PPARA_HUMAN
[Raw transfer]



NKS_B_4(3KDU)
PPARA_HUMAN
[Raw transfer]



7HA_B_4(3KDT)
PPARA_HUMAN
[Raw transfer]



4M5_A_4(5AZT)
PPARA_HUMAN
[Raw transfer]



7HA_A_3(3KDT)
PPARA_HUMAN
[Raw transfer]



MMB_C_6(2NPA)
PPARA_HUMAN
[Raw transfer]



735_C_3(2P54)
PPARA_HUMAN
[Raw transfer]



CTM_A_3(3FEI)
PPARA_HUMAN
[Raw transfer]



ET1_B_6(3ET1)
PPARA_HUMAN
[Raw transfer]



ET1_A_5(3ET1)
PPARA_HUMAN
[Raw transfer]



4M5_B_5(5AZT)
PPARA_HUMAN
[Raw transfer]



471_L_12(1KKQ)
PPARA_HUMAN
[Raw transfer]



471_K_11(1KKQ)
PPARA_HUMAN
[Raw transfer]



471_I_9(1KKQ)
PPARA_HUMAN
[Raw transfer]



471_J_10(1KKQ)
PPARA_HUMAN
[Raw transfer]



WY1_A_5(4BCR)
PPARA_HUMAN
[Raw transfer]



WY1_B_8(4BCR)
PPARA_HUMAN
[Raw transfer]
13 PsiBlast_PDB 72.91100%-170 - C1 -2P54 9.4 PPARA_HUMAN
27 Blastp_CBE 72.64100%-164 - C1 -3ET1 6.4 PPARA_HUMAN
11 PsiBlast_PDB 66.8899%-157 - C1 -2NPA 9.2 PPARA_HUMAN
25 Blastp_CBE 66.7799%-171 - C1 -3KDU 11.5 PPARA_HUMAN
6 PsiBlast_PDB 66.64100%-163 - C1 -3SP6 8.0 PPARA_HUMAN
26 Blastp_CBE 65.7199%-171 - C1 -3KDT 8.1 PPARA_HUMAN
28 Blastp_CBE 65.0599%-172 - C1 -2NPA 9.4 PPARA_HUMAN
2 PsiBlast_PDB 60.70100%-163 - C1 -4BCR 5.6 PPARA_HUMAN
8 PsiBlast_PDB 59.93100%-163 - C1 -3ET1 7.3 PPARA_HUMAN
5 PsiBlast_PDB 59.7299%-173 - C1 -3KDU 11.2 PPARA_HUMAN
4 PsiBlast_PDB 59.6699%-182 - C1 -3KDT 8.9 PPARA_HUMAN
24 Blastp_CBE 59.19100%-169 - C1 -4BCR 5.2 PPARA_HUMAN
29 Blastp_CBE 51.58100%-160 - C1 -1KKQ 11.3 PPARA_HUMAN
10 PsiBlast_PDB 51.03100%-161 - C1 -3VI8 11.2 PPARA_HUMAN
30 Blastp_CBE 50.44100%-166 - C1 -1KKQ 10.8 PPARA_HUMAN
15 PsiBlast_PDB 50.4499%-174 - C1 -5AZT 6.1 PPARA_HUMAN
7 PsiBlast_PDB 49.73100%-176 - C1 -3G8I 9.5 PPARA_HUMAN
31 Blastp_CBE 49.21100%-165 - C1 -1KKQ 10.7 PPARA_HUMAN
9 PsiBlast_PDB 48.63100%-162 - C1 -2ZNN 11.1 PPARA_HUMAN
3 PsiBlast_PDB 47.57100%-179 - C1 -4CI4 8.5 PPARA_HUMAN
12 PsiBlast_PDB 47.28100%-164 - C1 -1KKQ 10.7 PPARA_HUMAN
32 Blastp_CBE 46.3699%-168 * C1 *5AZT 5.0 PPARA_HUMAN
14 PsiBlast_PDB 41.84100%-174 - C1 -3FEI 7.5 PPARA_HUMAN