@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1H2_LXRb: (2019-04-19 )
MSSPTTSSLDTPLPGNGPPQPGAPSSSPTVKEEGPEPWPGGPDPDVPGTDEASSACSTDWVIPDPEEEPERKRKKGPAPKMLGHELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGARRYACRGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQSQSQSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

67S_A_5(5I4V)
NCOA2_HUMAN
[Raw transfer]



652_B_7(4RAK)
NR1H2_HUMAN
[Raw transfer]



G58_A_3(3L0E)
NR1H2_HUMAN
[Raw transfer]



CO1_E_5(1P8D)
NR1H2_HUMAN
[Raw transfer]



61X_B_6(3KFC)
NR1H2_HUMAN
[Raw transfer]



6OX_D_9(5JY3)
NR1H2_HUMAN
[Raw transfer]



61X_D_7(3KFC)
NR1H2_HUMAN
[Raw transfer]



44B_H_8(1PQ9)
NR1H2_HUMAN
[Raw transfer]



965_D_7(1PQ6)
NR1H2_HUMAN
[Raw transfer]



668_B_5(5HJP)
NR1H2_HUMAN
[Raw transfer]



CO1_F_6(1P8D)
NR1H2_HUMAN
[Raw transfer]



444_H_8(1PQC)
NR1H2_HUMAN
[Raw transfer]



668_D_8(5HJP)
NR1H2_HUMAN
[Raw transfer]



6OX_B_6(5JY3)
NR1H2_HUMAN
[Raw transfer]



965_B_6(1PQ6)
NR1H2_HUMAN
[Raw transfer]



6OX_C_8(5JY3)
NR1H2_HUMAN
[Raw transfer]



6OX_A_5(5JY3)
NR1H2_HUMAN
[Raw transfer]



0KS_A_5(4DK7)
NR1H2_HUMAN
[Raw transfer]



0KT_C_11(4DK8)
NR1H2_HUMAN
[Raw transfer]



444_G_7(1PQC)
NR1H2_HUMAN
[Raw transfer]



0KT_A_5(4DK8)
NR1H2_HUMAN
[Raw transfer]



444_F_6(1PQC)
NR1H2_HUMAN
[Raw transfer]



44B_L_12(1PQ9)
NR1H2_HUMAN
[Raw transfer]



44B_J_10(1PQ9)
NR1H2_HUMAN
[Raw transfer]



BU1_A_3(4RAK)
NR1H2_HUMAN
[Raw transfer]



IPA_A_8(1PQ6)
NR1H2_HUMAN
[Raw transfer]
13 PsiBlast_PDB 46.5097%-132 - C1 -3L0E 10.4 NR1H2_HUMAN
14 PsiBlast_PDB 45.9298%-137 - C1 -5HJP 10.3 NR1H2_HUMAN
12 PsiBlast_PDB 44.8597%-128 - C1 -5I4V 9.0 NCOA2_HUMAN (first)
31 Blastp_CBE 44.81100%-128 - C1 -1PQ6 12.6 NR1H2_HUMAN
4 PsiBlast_PDB 42.26100%-136 - C1 -1PQ6 2.1 NR1H2_HUMAN
30 Blastp_CBE 41.91100%-149 - C1 -1PQ6 11.9 NR1H2_HUMAN
38 Blastp_CBE 40.4398%-130 - C1 -5HJP 10.1 NR1H2_HUMAN
15 PsiBlast_PDB 39.9696%-132 - C1 -4DK7 6.9 NR1H2_HUMAN
10 PsiBlast_PDB 39.0599%-121 - C1 -1P8D 9.1 NR1H2_HUMAN
36 Blastp_CBE 38.5699%-119 - C1 -1P8D 9.2 NR1H2_HUMAN
11 PsiBlast_PDB 38.1298%-128 - C1 -4DK8 9.1 NR1H2_HUMAN
22 Blastp_CBE 38.04100%-128 - C1 -3KFC 9.6 NR1H2_HUMAN
29 Blastp_CBE 38.00100%-123 - C1 -1PQ9 5.9 NR1H2_HUMAN
23 Blastp_CBE 37.90100%-127 - C1 -3KFC 10.5 NR1H2_HUMAN
37 Blastp_CBE 37.8699%-131 * C1 *4DK8 8.7 NR1H2_HUMAN
35 Blastp_CBE 37.8398%-130 - C1 -4RAK 11.9 NR1H2_HUMAN
26 Blastp_CBE 37.11100%-121 - C1 -1PQC 8.6 NR1H2_HUMAN
25 Blastp_CBE 37.01100%-127 - C1 -1PQC 8.2 NR1H2_HUMAN
34 Blastp_CBE 35.7498%-131 - C1 -5JY3 11.6 NR1H2_HUMAN
32 Blastp_CBE 35.3898%-130 - C1 -5JY3 11.7 NR1H2_HUMAN
28 Blastp_CBE 34.91100%-121 - C1 -1PQ9 5.8 NR1H2_HUMAN
24 Blastp_CBE 34.56100%-150 - C1 -1PQC 3.3 NR1H2_HUMAN
27 Blastp_CBE 34.22100%-152 - C1 -1PQ9 6.0 NR1H2_HUMAN
8 PsiBlast_PDB 25.5097%-118 - C1 -4RAK 2.4 NR1H2_HUMAN
9 PsiBlast_PDB 23.3597%-127 - C1 -5JY3 10.7 NR1H2_HUMAN
33 Blastp_CBE 20.6298%-126 - C1 -5JY3 11.3 NR1H2_HUMAN