@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR4A1_NGFIB: (2019-04-20 )
MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDASPANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIFMDTLPF

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_5(3V3E)
NR4A1_HUMAN
[Raw transfer]



GOL_A_5(4KZJ)
NR4A1_HUMAN
[Raw transfer]



GOL_B_3(4RZF)

[Raw transfer]



GOL_B_3(4RZG)

[Raw transfer]



GOL_B_3(4KZM)

[Raw transfer]



GOL_B_3(4KZJ)

[Raw transfer]



GOL_A_5(4RZF)
NR4A1_HUMAN
[Raw transfer]



GOL_A_5(4KZI)
NR4A1_HUMAN
[Raw transfer]



GOL_A_5(4REE)
NR4A1_HUMAN
[Raw transfer]



GOL_B_10(4JGV)

[Raw transfer]



GOL_A_4(4RE8)
NR4A1_HUMAN
[Raw transfer]



GOL_A_5(4RZE)
NR4A1_HUMAN
[Raw transfer]



GOL_B_3(3V3E)

[Raw transfer]



GOL_B_3(4WHG)

[Raw transfer]



GOL_A_5(4RZG)
NR4A1_HUMAN
[Raw transfer]



GOL_A_4(4REF)
NR4A1_HUMAN
[Raw transfer]



GOL_B_3(4RZE)

[Raw transfer]



GOL_A_4(4WHG)
NR4A1_HUMAN
[Raw transfer]



GOL_B_3(4REF)

[Raw transfer]



GOL_A_5(4KZM)
NR4A1_HUMAN
[Raw transfer]



GOL_B_3(4REE)

[Raw transfer]



GOL_B_3(4WHF)

[Raw transfer]



GOL_B_3(4KZI)

[Raw transfer]



GOL_A_4(4WHF)
NR4A1_HUMAN
[Raw transfer]
7 PsiBlast_PDB 90.04100%-168 - C1 -4REE 2.3
6 PsiBlast_PDB 90.00100%-164 - C1 -4RZG 2.3
5 PsiBlast_PDB 89.65100%-166 - C1 -4WHG 2.4
22 Blastp_CBE 89.52100%-167 - C1 -4WHG 2.3 NR4A1_HUMAN
3 PsiBlast_PDB 89.44100%-168 - C1 -4KZI 2.5
28 Blastp_CBE 88.58100%-165 - C1 -4REE 2.1 NR4A1_HUMAN
2 PsiBlast_PDB 88.40100%-165 - C1 -3V3E 2.5
10 PsiBlast_PDB 88.1999%-163 - C1 -4REF 1.9
26 Blastp_CBE 88.15100%-168 - C1 -3V3E 2.4 NR4A1_HUMAN
11 PsiBlast_PDB 87.9099%-168 - C1 -4RZF 2.5
24 Blastp_CBE 87.77100%-170 - C1 -4KZI 2.2 NR4A1_HUMAN
9 PsiBlast_PDB 87.6699%-176 - C1 -4KZJ 2.7
33 Blastp_CBE 87.4699%-164 - C1 -4RZF 2.3 NR4A1_HUMAN
29 Blastp_CBE 87.37100%-162 - C1 -4RE8 1.8 NR4A1_HUMAN
27 Blastp_CBE 87.28100%-166 - C1 -4RZG 2.1 NR4A1_HUMAN
8 PsiBlast_PDB 87.1199%-167 - C1 -4KZM 2.5
4 PsiBlast_PDB 86.95100%-162 - C1 -4WHF 2.2
23 Blastp_CBE 86.87100%-167 * C1 *4WHF 3.4 NR4A1_HUMAN
12 PsiBlast_PDB 86.8399%-170 - C1 -4RZE 2.3
30 Blastp_CBE 86.5799%-163 - C1 -4KZM 1.8 NR4A1_HUMAN
34 Blastp_CBE 86.4799%-163 - C1 -4RZE 3.3 NR4A1_HUMAN
31 Blastp_CBE 85.8499%-160 - C1 -4KZJ 2.7 NR4A1_HUMAN
32 Blastp_CBE 85.6899%-160 - C1 -4REF 1.9 NR4A1_HUMAN
21 Blastp_CBE 84.26100%-171 - C1 -4JGV 2.3