@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR5A2_LRH1: (2019-04-20 )
MSSNSDTGDLQESLKHGLTPIGAGLPDRHGSPIPARGRLVMLPKVETEALGLARSHGEQGQMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKRA

Atome Classification :

(18 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P3A_D_4(1ZDU)

[Raw transfer]



PIZ_A_3(4RWV)

[Raw transfer]



EPH_B_5(4DOR)

[Raw transfer]



EPH_A_5(4ONI)
NR5A2_HUMAN
[Raw transfer]



EPH_C_13(4PLE)
NR5A2_HUMAN
[Raw transfer]



EPH_G_22(4PLE)

[Raw transfer]



EPH_E_5(1YUC)
NR5A2_HUMAN
[Raw transfer]



P6L_D_4(1YOK)

[Raw transfer]



EPH_E_16(4PLE)
NR5A2_HUMAN
[Raw transfer]



EPH_A_9(4PLE)
NR5A2_HUMAN
[Raw transfer]



EPH_F_6(1YUC)

[Raw transfer]



P6L_B_9(4ONI)

[Raw transfer]



PLC_A_6(4DOS)

[Raw transfer]



RJW_A_3(5UNJ)

[Raw transfer]



71W_A_3(5SYZ)

[Raw transfer]



RJW_A_3(5L11)

[Raw transfer]



470_A_5(3PLZ)
NR5A2_HUMAN
[Raw transfer]



470_B_7(3PLZ)

[Raw transfer]
1 PsiBlast_PDB 87.8799%-160 - C1 -1YUC 10.5 NR5A2_HUMAN
10 PsiBlast_PDB 87.1599%-170 - C1 -1YOK 11.7
26 Blastp_CBE 86.9599%-159 * C1 *4PLE 11.8 NR5A2_HUMAN
13 PsiBlast_PDB 85.9299%-156 - C1 -4DOS 9.7
25 Blastp_CBE 85.5299%-158 - C1 -4PLE 12.0 NR5A2_HUMAN
3 PsiBlast_PDB 85.30100%-155 - C1 -4ONI 10.7 NR5A2_HUMAN
7 PsiBlast_PDB 84.7499%-155 - C1 -4PLE 11.6 NR5A2_HUMAN
24 Blastp_CBE 84.2399%-155 - C1 -4PLE 12.1
12 PsiBlast_PDB 84.1499%-161 - C1 -5SYZ 7.8
22 Blastp_CBE 83.4299%-154 - C1 -1YUC 11.1
27 Blastp_CBE 83.2699%-157 - C1 -3PLZ 8.6
21 Blastp_CBE 82.7799%-150 - C1 -4DOR 11.4
8 PsiBlast_PDB 82.6599%-164 - C1 -5L11 8.1
23 Blastp_CBE 82.03100%-148 - C1 -4ONI 11.2
4 PsiBlast_PDB 81.4399%-148 - C1 -4RWV 10.6
5 PsiBlast_PDB 80.89100%-166 - C1 -1ZDU 12.2
11 PsiBlast_PDB 79.7999%-166 - C1 -3PLZ 8.2 NR5A2_HUMAN
9 PsiBlast_PDB 75.1799%-172 - C1 -5UNJ 8.2