@TOME V3
(Feb 2022)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1A1_THRa: (2019-08-14 )
MEQKPSKVECGSDPEENSARSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQSSILYKGAAAEGRPGGSLGVHPEGQQLLGMHVVQGPQVRQLEQQLGEAGSLQGPVLQHQSPKSPQQRLLELLHRSGILHARAVCGEDDSSEADSPSSSEEEPEVCEDLAGNAASP

Atome Classification :

(8 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

B72_A_2(3HZF)
THA_HUMAN
[Raw transfer]




T3_A_2(2H79)
THA_HUMAN
[Raw transfer]




T3_A_2(2H77)
THA_HUMAN
[Raw transfer]




T3_A_2(4LNW)
THA_HUMAN
[Raw transfer]




B72_A_2(3ILZ)
THA_HUMAN
[Raw transfer]




T3_A_3(4LNX)
THA_HUMAN
[Raw transfer]




4HY_A_2(3JZB)
THA_HUMAN
[Raw transfer]




IH5_A_3(1NAV)
THA_HUMAN
[Raw transfer]




1 PsiBlast_PDB 61.41100%-112 - C1 -1NAV 7.6 THA_HUMAN
6 PsiBlast_PDB 61.3999% -98 - C1 -3ILZ 8.2 THA_HUMAN
7 PsiBlast_PDB 54.5799% -94 - C1 -4LNW 8.1 THA_HUMAN
8 PsiBlast_PDB 53.8599% -94 - C1 -4LNX 8.1 THA_HUMAN
2 PsiBlast_PDB 52.9099% -98 - C1 -2H77 8.4 THA_HUMAN
3 PsiBlast_PDB 51.6799% -96 - C1 -2H79 8.0 THA_HUMAN
5 PsiBlast_PDB 50.3899% -96 - C1 -3JZB 7.8 THA_HUMAN
4 PsiBlast_PDB 48.5199% -94 - C1 -3HZF 8.5 THA_HUMAN