@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1H3_LXRa: (2019-08-14 )
MSLWLGAPVPDIPPDSAVELWKPGAQDASSQAQGGSSCILREEARMPHSAGGTAGVGLEAAEPTALLTRAEPPSEPTEIRPQKRKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYICHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAHATSLPPRASSPPQILPQLSPEQLGMIEKLVAAQQQCNRRSFSDRLRVTPWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE

Atome Classification :

(15 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

O40_A_5(3IPU)
NR1H3_HUMAN
[Raw transfer]



LX2_D_8(3FC6)
NR1H3_MOUSE
[Raw transfer]



LX2_B_6(3FC6)
NR1H3_MOUSE
[Raw transfer]



O40_B_6(3IPU)
NR1H3_HUMAN
[Raw transfer]



LO2_D_8(3FAL)
NR1H3_MOUSE
[Raw transfer]



LO2_B_6(3FAL)
NR1H3_MOUSE
[Raw transfer]



965_A_3(3IPQ)
NR1H3_HUMAN
[Raw transfer]



4KQ_A_3(5AVL)
NR1H3_HUMAN
[Raw transfer]



4KM_C_6(5AVI)
NR1H3_HUMAN
[Raw transfer]



O90_A_6(3IPS)
NR1H3_HUMAN
[Raw transfer]



4KM_A_5(5AVI)
NR1H3_HUMAN
[Raw transfer]



668_A_5(5HJS)
NR1H3_HUMAN
[Raw transfer]



668_B_6(5HJS)
NR1H3_HUMAN
[Raw transfer]



O90_B_7(3IPS)
NR1H3_HUMAN
[Raw transfer]



444_E_5(1UHL)
NR1H3_HUMAN
[Raw transfer]
26 Blastp_CBE 61.4396%-131 - C1 -3FAL 10.0 NR1H3_MOUSE
25 Blastp_CBE 60.8696%-129 - C1 -3FC6 13.1 NR1H3_MOUSE
3 PsiBlast_PDB 59.68100%-133 - C1 -3IPU 8.8 NR1H3_HUMAN
9 PsiBlast_PDB 59.0795%-137 - C1 -3FC6 13.3 NR1H3_MOUSE
10 PsiBlast_PDB 58.7795%-132 - C1 -3FAL 9.7 NR1H3_MOUSE
23 Blastp_CBE 58.25100%-134 - C1 -3IPU 8.9 NR1H3_HUMAN
22 Blastp_CBE 57.73100%-145 - C1 -5AVI 9.5 NR1H3_HUMAN
4 PsiBlast_PDB 57.66100%-145 - C1 -5AVI 9.5 NR1H3_HUMAN
6 PsiBlast_PDB 57.34100%-152 - C1 -5HJS 10.0 NR1H3_HUMAN
21 Blastp_CBE 56.45100%-151 - C1 -5HJS 10.2 NR1H3_HUMAN
24 Blastp_CBE 55.73100%-148 * C1 *3IPS 8.8 NR1H3_HUMAN
5 PsiBlast_PDB 52.21100%-150 - C1 -5AVL 11.1 NR1H3_HUMAN
2 PsiBlast_PDB 51.11100%-148 - C1 -3IPS 9.9 NR1H3_HUMAN
1 PsiBlast_PDB 48.64100%-146 - C1 -3IPQ 12.6 NR1H3_HUMAN
8 PsiBlast_PDB 37.5099%-137 - C1 -1UHL 6.2 NR1H3_HUMAN