@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR2A1_HNF4a: (2019-08-15 )
MRLSKTLVDMDMADYSAALDPAYTTLEFENVQVLTMGNDTSPSEGTNLNAPNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPSINALLQAEVLSRQITSPVSGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLLGGSPSDAPHAHHPLHPHLMQEHMGTNVIVANTMPTHLSNGQMCEWPRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTITKQEVI

Atome Classification :

(6 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MYR_C_3(1PZL)
HNF4A_HUMAN
[Raw transfer]



MYR_A_3(3FS1)
HNF4A_HUMAN
[Raw transfer]



DAO_E_5(1M7W)
HNF4A_RAT
[Raw transfer]



DAO_H_8(1M7W)
HNF4A_RAT
[Raw transfer]



DAO_F_6(1M7W)
HNF4A_RAT
[Raw transfer]



DAO_G_7(1M7W)
HNF4A_RAT
[Raw transfer]
5 PsiBlast_PDB 72.8099%-156 - C1 -1PZL 6.4 HNF4A_HUMAN
6 PsiBlast_PDB 72.16100%-153 - C1 -3FS1 6.6 HNF4A_HUMAN
3 PsiBlast_PDB 68.5397%-167 - C1 -1M7W 5.3 HNF4A_RAT
31 Blastp_CBE 67.4197%-165 - C1 -1M7W 4.7 HNF4A_RAT
33 Blastp_CBE 62.7697%-154 - C1 -1M7W 5.4 HNF4A_RAT
32 Blastp_CBE 61.7097%-145 - C1 -1M7W 4.6 HNF4A_RAT