@TOME V3
(Feb 2022)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1D1_REVa: (2021-05-27 )
MTTLDSNNNTGGVITYIGSSGSSPSRTSPESLYSDNSNGSFQSLTQGCPTYFPPSPTGSLTQDPARSFGSIPPSLSDDGSPSSSSSSSSSSSSFYNGSPPGSLQVAMEDSSRVSPSKSTSNITKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQSAMNLANNQLSSQCPLETSPTQHPTPGPMGPSPPPAPVPSPLVGFSQFPQQLTPPRSPSPEPTVEDVISQVARAHREIFTYAHDKLGSSPGNFNANHASGSPPATTPHRWENQGCPPAPNDNNTLAAQRHNEALNGLRQAPSSYPPTWPPGPAHHSCHQSNSNGHRLCPTHVYAAPEGKAPANSPRQGNSKNVLLACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEEELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDLRTLNNMHSEKLLSFRVDAQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

COH_A_2(4N73)

[Raw transfer]



HEM_A_2(3CQV)

[Raw transfer]
2 PsiBlast_PDB 91.0771%-173 - C2 -4N73 12.5
4 PsiBlast_PDB 88.9368%-170 - C2 -3CQV 12.7
3 PsiBlast_PDB 81.6773%-169 - C2 -2V0V - NR1D2_HUMAN -
17 PsiBlast_PDB 76.8039%-192 - C2 -1S0X - -
16 PsiBlast_PDB 75.1439%-187 - C2 -1N83 - -
15 PsiBlast_PDB 73.2239%-183 - C2 -4S15 - RORA_HUMAN -
18 PsiBlast_PDB 72.0037%-178 - C2 -6J1L - RORG_HUMAN -
5 PsiBlast_PDB 71.4469%-160 - C2 -2V7C - NR1D2_HUMAN -
20 PsiBlast_PDB 69.7437%-162 - C2 -5IZ0 - -
12 PsiBlast_PDB 69.2440%-185 * C2 *1N4H - RORB_RAT -
13 PsiBlast_PDB 68.4440%-185 - C2 -1K4W - RORB_RAT -
14 PsiBlast_PDB 68.3540%-187 - C2 -1NQ7 - RORB_RAT -
19 PsiBlast_PDB 66.6938%-163 - C2 -6CN6 - RORG_HUMAN -
1 PsiBlast_PDB 44.49100% 42 - C2 -3N00 - NR1D1_HUMAN -
11 PsiBlast_PDB 29.6359%-163 - C1 -3E00 - PPARG_HUMAN -
9 PsiBlast_PDB 27.9959%-154 - C1 -3DZU - PPARG_HUMAN -
6 PsiBlast_PDB 27.4198%-166 - C1 -1HLZ - NR1D1_HUMAN -
10 PsiBlast_PDB 26.7359%-146 * C1 *3DZY - PPARG_HUMAN -
8 PsiBlast_PDB 25.3498%-152 - C1 -1A6Y - NR1D1_HUMAN -
7 PsiBlast_PDB 24.6898%-146 - C1 -1GA5 - ? -