@TOME V3
(Feb 2022)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1F1_RORa: (2021-05-27 )
MNEGAPGDSDLETEARVPWSIMGHCLRTGQARMSATPTPAGEGARRDELFGILQILHQCILSSGDAFVLTGVCCSWRQNGKPPYSQKEDKEVQTGYMNAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

C3S_B_2(1S0X)

[Raw transfer]




4D8_B_7(4S15)

[Raw transfer]




CLR_B_2(1N83)

[Raw transfer]




4D8_A_5(4S15)
RORA_HUMAN
[Raw transfer]




ARL_A_3(1NQ7)
RORB_RAT
[Raw transfer]




EF5_A_5(6G05)
RORG_HUMAN
[Raw transfer]




98N_A_9(5NTW)

[Raw transfer]




REA_C_3(1N4H)
RORB_RAT
[Raw transfer]




C3S_A_9(5NTI)

[Raw transfer]




98H_A_9(5NTN)
RORG_HUMAN
[Raw transfer]




4D8_A_3(4S14)

[Raw transfer]




STE_C_3(1K4W)
RORB_RAT
[Raw transfer]




8YB_A_5(5NU1)
RORG_HUMAN
[Raw transfer]




EEZ_A_9(6G07)
RORG_HUMAN
[Raw transfer]




4LQ_A_3(5AYG)
RORG_HUMAN
[Raw transfer]




6Q5_A_3(5X8S)
?
[Raw transfer]




B6L_A_4(6J1L)
RORG_HUMAN
[Raw transfer]




F7M_A_3(6CN5)
RORG_HUMAN
[Raw transfer]




EE8_A_5(6FZU)

[Raw transfer]




444_A_5(5EJV)

[Raw transfer]




2 PsiBlast_PDB 85.29100%-172 - C1 -1N83 8.9
3 PsiBlast_PDB 81.04100%-171 - C1 -1S0X 9.9
1 PsiBlast_PDB 74.04100%-168 - C1 -4S15 9.0 RORA_HUMAN
21 Blastp_CBE 71.17100%-161 - C1 -4S15 8.6
16 PsiBlast_PDB 62.9952%-179 - C1 -5EJV 3.0
9 PsiBlast_PDB 54.7952%-167 - C1 -5NTW 9.0
20 PsiBlast_PDB 52.4652%-173 - C1 -5X8U - ? -
13 PsiBlast_PDB 52.0352%-168 - C1 -6G07 8.9 RORG_HUMAN
14 PsiBlast_PDB 51.8652%-168 - C1 -4S14 7.3
11 PsiBlast_PDB 51.6652%-170 - C1 -6FZU 4.1
8 PsiBlast_PDB 50.5152%-168 - C1 -5NTN 8.1 RORG_HUMAN
6 PsiBlast_PDB 49.0462%-168 - C1 -1NQ7 8.3 RORB_RAT
7 PsiBlast_PDB 47.6552%-168 - C1 -5NTI 8.9
10 PsiBlast_PDB 46.1952%-168 * C1 *5NU1 8.5 RORG_HUMAN
4 PsiBlast_PDB 44.4362%-167 - C1 -1K4W 2.3 RORB_RAT
12 PsiBlast_PDB 43.1552%-165 - C1 -6G05 8.4 RORG_HUMAN
17 PsiBlast_PDB 39.6752%-174 - C1 -6CN5 9.1 RORG_HUMAN
5 PsiBlast_PDB 38.8261%-162 - C1 -1N4H 6.5 RORB_RAT
19 PsiBlast_PDB 25.9452%-169 - C1 -5X8S 8.1 ?
15 PsiBlast_PDB 22.8649%-172 - C1 -6J1L 8.5 RORG_HUMAN
18 PsiBlast_PDB 14.7252%-172 - C1 -5AYG 8.3 RORG_HUMAN