@TOME V3
(Feb 2022)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1H3_LXRa: (2021-05-27 )
MSLWLGAPVPDIPPDSAVELWKPGAQDASSQAQGGSSCILREEARMPHSAGGTAGVGLEAAEPTALLTRAEPPSEPTEIRPQKRKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYICHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAHATSLPPRASSPPQILPQLSPEQLGMIEKLVAAQQQCNRRSFSDRLRVTPWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LX2_D_8(3FC6)
NR1H3_MOUSE
[Raw transfer]



LX2_B_6(3FC6)
NR1H3_MOUSE
[Raw transfer]



965_A_3(3IPQ)
NR1H3_HUMAN
[Raw transfer]



KVB_A_2(6S4T)
NR1H2_HUMAN
[Raw transfer]



4KQ_A_3(5AVL)
NR1H3_HUMAN
[Raw transfer]



O40_B_6(3IPU)
NR1H3_HUMAN
[Raw transfer]



965_A_5(1PQ6)
NR1H2_HUMAN
[Raw transfer]



4KM_C_6(5AVI)
NR1H3_HUMAN
[Raw transfer]



4KM_A_5(5AVI)
NR1H3_HUMAN
[Raw transfer]



LO2_B_6(3FAL)
NR1H3_MOUSE
[Raw transfer]



O40_A_5(3IPU)
NR1H3_HUMAN
[Raw transfer]



O90_A_6(3IPS)
NR1H3_HUMAN
[Raw transfer]



LO2_D_8(3FAL)
NR1H3_MOUSE
[Raw transfer]



668_B_6(5HJS)
NR1H3_HUMAN
[Raw transfer]



668_A_5(5HJS)
NR1H3_HUMAN
[Raw transfer]



O90_B_7(3IPS)
NR1H3_HUMAN
[Raw transfer]



CO1_E_5(1P8D)
NR1H2_HUMAN
[Raw transfer]



444_E_5(1UHL)
NR1H3_HUMAN
[Raw transfer]



652_A_5(4RAK)
NR1H2_HUMAN
[Raw transfer]



KVK_A_4(6S4U)
NR1H2_HUMAN
[Raw transfer]



444_A_2(1UPV)
NR1H2_HUMAN
[Raw transfer]



444_A_2(1UPW)
NR1H2_HUMAN
[Raw transfer]



KUW_D_5(6S4N)
NR1H2_HUMAN
[Raw transfer]



6OX_A_5(5JY3)
NR1H2_HUMAN
[Raw transfer]
7 PsiBlast_PDB 80.0068% 23 - C1 -4NQA - NR1H2_HUMAN (first) -
26 Blastp_CBE 61.4896%-131 - C1 -3FAL 10.0 NR1H3_MOUSE
25 Blastp_CBE 60.9196%-129 - C1 -3FC6 13.1 NR1H3_MOUSE
3 PsiBlast_PDB 59.72100%-133 - C1 -3IPU 8.8 NR1H3_HUMAN
9 PsiBlast_PDB 59.1295%-137 - C1 -3FC6 13.3 NR1H3_MOUSE
10 PsiBlast_PDB 58.7895%-132 - C1 -3FAL 9.7 NR1H3_MOUSE
23 Blastp_CBE 58.28100%-134 * C1 *3IPU 8.9 NR1H3_HUMAN
11 PsiBlast_PDB 58.1298%-118 - C1 -2ACL - NR1H3_MOUSE -
22 Blastp_CBE 57.76100%-145 - C1 -5AVI 9.5 NR1H3_HUMAN
4 PsiBlast_PDB 57.72100%-145 - C1 -5AVI 9.5 NR1H3_HUMAN
6 PsiBlast_PDB 57.35100%-152 - C1 -5HJS 10.0 NR1H3_HUMAN
21 Blastp_CBE 56.47100%-151 - C1 -5HJS 10.2 NR1H3_HUMAN
24 Blastp_CBE 55.74100%-148 - C1 -3IPS 8.8 NR1H3_HUMAN
5 PsiBlast_PDB 52.21100%-150 - C1 -5AVL 11.1 NR1H3_HUMAN
2 PsiBlast_PDB 51.14100%-148 - C1 -3IPS 9.9 NR1H3_HUMAN
1 PsiBlast_PDB 48.62100%-146 - C1 -3IPQ 12.6 NR1H3_HUMAN
18 PsiBlast_PDB 46.7576%-134 - C1 -6S4T 12.3 NR1H2_HUMAN
12 PsiBlast_PDB 43.7176%-126 - C1 -1P8D 9.1 NR1H2_HUMAN
19 PsiBlast_PDB 43.6876%-136 - C1 -6S4U 8.3 NR1H2_HUMAN
17 PsiBlast_PDB 41.0776%-132 - C1 -6S4N 10.7 NR1H2_HUMAN
20 PsiBlast_PDB 39.7876%-139 - C1 -1PQ6 11.7 NR1H2_HUMAN
8 PsiBlast_PDB 37.4199%-137 - C1 -1UHL 6.2 NR1H3_HUMAN
15 PsiBlast_PDB 36.2476%-136 - C1 -1UPV 6.6 NR1H2_HUMAN
16 PsiBlast_PDB 35.6776%-128 - C1 -1UPW 6.1 NR1H2_HUMAN
13 PsiBlast_PDB 28.8276%-120 - C1 -4RAK 10.1 NR1H2_HUMAN
14 PsiBlast_PDB 26.2576%-130 - C1 -5JY3 10.6 NR1H2_HUMAN