@TOME V3
(Feb 2022)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR2A1_HNF4a: (2021-05-27 )
MRLSKTLVDMDMADYSAALDPAYTTLEFENVQVLTMGNDTSPSEGTNLNAPNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPSINALLQAEVLSRQITSPVSGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLLGGSPSDAPHAHHPLHPHLMQEHMGTNVIVANTMPTHLSNGQMCEWPRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTITKQEVI

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MYR_C_3(1PZL)
HNF4A_HUMAN
[Raw transfer]



MYR_A_3(3FS1)
HNF4A_HUMAN
[Raw transfer]



DAO_E_5(1M7W)
HNF4A_RAT
[Raw transfer]



DAO_F_6(1M7W)
HNF4A_RAT
[Raw transfer]



DAO_G_7(1M7W)
HNF4A_RAT
[Raw transfer]



PLM_B_2(1LV2)
HNF4G_HUMAN
[Raw transfer]



DAO_H_8(1M7W)
HNF4A_RAT
[Raw transfer]
21 Blastp_CBE 94.5698%-144 - C1 -4IQR - HNF4A_HUMAN -
23 Blastp_CBE 92.9298%-152 - C1 -4IQR - HNF4A_HUMAN -
22 Blastp_CBE 91.7498%-141 - C1 -4IQR - HNF4A_HUMAN -
1 PsiBlast_PDB 89.1397%-139 - C1 -4IQR - HNF4A_HUMAN -
5 PsiBlast_PDB 72.8099%-156 - C1 -1PZL 6.4 HNF4A_HUMAN
6 PsiBlast_PDB 72.16100%-153 - C1 -3FS1 6.6 HNF4A_HUMAN
3 PsiBlast_PDB 68.5397%-167 - C1 -1M7W 5.3 HNF4A_RAT
31 Blastp_CBE 67.4197%-165 - C1 -1M7W 4.7 HNF4A_RAT
29 Blastp_CBE 65.82100%-174 - C1 -6CHT - HNF4A_HUMAN -
2 PsiBlast_PDB 65.27100%-163 - C1 -6CHT - HNF4A_HUMAN -
4 PsiBlast_PDB 64.61100%-187 - C1 -4B7W - HNF4A_HUMAN -
27 Blastp_CBE 63.93100%-166 * C1 *6CHT - HNF4A_HUMAN -
33 Blastp_CBE 62.7697%-154 - C1 -1M7W 5.4 HNF4A_RAT
7 PsiBlast_PDB 62.3481%-148 - C1 -1LV2 5.6 HNF4G_HUMAN
30 Blastp_CBE 61.81100%-161 - C1 -6CHT - HNF4A_HUMAN -
32 Blastp_CBE 61.7097%-145 - C1 -1M7W 4.6 HNF4A_RAT
24 Blastp_CBE 61.51100%-171 - C1 -6CHT - HNF4A_HUMAN -
26 Blastp_CBE 61.04100%-168 - C1 -6CHT - HNF4A_HUMAN -
28 Blastp_CBE 60.07100%-145 - C1 -6CHT - HNF4A_HUMAN -
10 PsiBlast_PDB 56.6842% -9 - C1 -4NQA - RXRA_HUMAN -