@TOME V3
(Feb 2022)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR2B2_RXRb: (2021-05-27 )
MSWAARPPFLPQRHAAGQCGPVGVRKEMHCGVASRWRRRRPWLDPAAAAAAAVAGGEQQTPEPEPGEAGRDGMGDSGRDSRSPDSSSPNPLPQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLGSPFPVISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPPGGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPEEMPVDRILEAELAVEQKSDQGVEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLM_A_3(7A78)

[Raw transfer]



LG2_C_11(1H9U)
RXRB_HUMAN
[Raw transfer]



LG2_A_5(1H9U)
RXRB_HUMAN
[Raw transfer]



LG2_B_8(1H9U)
RXRB_HUMAN
[Raw transfer]



L79_E_5(1RDT)
RXRA_HUMAN
[Raw transfer]



REA_A_11(3E00)
RXRA_HUMAN
[Raw transfer]



LG2_D_13(1H9U)

[Raw transfer]



MEI_F_6(1UHL)

[Raw transfer]



9CR_A_9(5UAN)
RXRA_HUMAN
[Raw transfer]



REA_B_4(3UVV)
RXRA_HUMAN
[Raw transfer]



REA_A_11(3DZU)
RXRA_HUMAN
[Raw transfer]



T9T_A_3(3KWY)
RXRA_HUMAN
[Raw transfer]



REA_A_5(3FC6)
RXRA_HUMAN
[Raw transfer]



TBY_A_3(3E94)
RXRA_HUMAN
[Raw transfer]



2QO_A_3(4OC7)
RXRA_HUMAN
[Raw transfer]



REA_A_5(3FAL)
RXRA_HUMAN
[Raw transfer]



9HF_A_6(5ZQU)
RXRA_HUMAN
[Raw transfer]
4 PsiBlast_PDB 84.8683%-139 - C1 -5UAN 7.2 RXRA_HUMAN
1 PsiBlast_PDB 82.1173%-126 - C1 -3DZU 7.2 RXRA_HUMAN
2 PsiBlast_PDB 81.9173%-126 * C1 *3E00 7.7 RXRA_HUMAN
3 PsiBlast_PDB 79.9783% 37 - C1 -4NQA - RXRA_HUMAN -
5 PsiBlast_PDB 77.94100%-146 - C1 -1UHL 5.8
21 Blastp_CBE 77.02100%-138 - C1 -7A78 7.6
18 PsiBlast_PDB 74.0886%-137 - C1 -4OC7 7.5 RXRA_HUMAN
22 Blastp_CBE 72.72100%-151 - C1 -5HJP - -
6 PsiBlast_PDB 70.57100%-156 - C1 -5HJP - RXRB_HUMAN -
12 PsiBlast_PDB 68.9887%-132 - C1 -3UVV 7.9 RXRA_HUMAN
10 PsiBlast_PDB 68.65100%-161 - C1 -1H9U 9.8 RXRB_HUMAN
13 PsiBlast_PDB 68.5087%-139 - C1 -1RDT 9.8 RXRA_HUMAN
11 PsiBlast_PDB 68.4085%-112 - C1 -6HN6 - RXRA_HUMAN -
19 PsiBlast_PDB 68.3386%-141 - C1 -3E94 5.8 RXRA_HUMAN
25 Blastp_CBE 67.83100%-157 - C1 -1H9U 9.9 RXRB_HUMAN
23 Blastp_CBE 67.76100%-155 - C1 -1H9U 9.6
7 PsiBlast_PDB 67.64100% 0 - C- -5I4V - NCOA2_HUMAN (first) -
9 PsiBlast_PDB 67.63100% 0 - C- -5KYJ - RXRB_HUMAN -
20 PsiBlast_PDB 67.5386%-144 - C1 -3KWY 7.5 RXRA_HUMAN
24 Blastp_CBE 67.33100%-157 - C1 -1H9U 9.5 RXRB_HUMAN
14 PsiBlast_PDB 62.4187%-136 - C1 -3FC6 7.6 RXRA_HUMAN
16 PsiBlast_PDB 61.9786%-159 - C1 -5ZQU 3.9 RXRA_HUMAN
15 PsiBlast_PDB 59.7087%-127 - C1 -3FAL 6.8 RXRA_HUMAN