@TOME V3
(Feb 2022)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR2F1_COT1: (2021-05-27 )
MAMVVSSWRDPQDDVAGGNPGGPNPAAQAARGGGGGAGEQQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

9HF_A_5(5ZQU)
RXRA_HUMAN
[Raw transfer]
1 PsiBlast_PDB 78.9796%-171 - C1 -3CJW - COT2_HUMAN -
4 PsiBlast_PDB 70.8244% -16 - C1 -4NQA - RXRA_HUMAN -
2 PsiBlast_PDB 70.6744% -66 - C1 -3DZU - RXRA_HUMAN -
3 PsiBlast_PDB 69.7144% -68 - C1 -3E00 - RXRA_HUMAN -
5 PsiBlast_PDB 63.4044% -70 - C1 -5UAN - RXRA_HUMAN -
6 PsiBlast_PDB 58.3238% -48 - C1 -4IQR - HNF4A_HUMAN -
10 PsiBlast_PDB 54.3745%-179 - C1 -4LOG - MALE_ECOLI (first) -
8 PsiBlast_PDB 46.8038% -54 - C1 -6HN6 - RXRA_HUMAN -
11 PsiBlast_PDB 42.7443% -19 - C1 -1DKF - RXRA_MOUSE -
16 PsiBlast_PDB 41.8042% -29 - C1 -3E94 - RXRA_HUMAN -
12 PsiBlast_PDB 41.2942% -23 - C1 -4OC7 - RXRA_HUMAN -
17 PsiBlast_PDB 38.4242% -27 - C1 -3KWY - RXRA_HUMAN -
14 PsiBlast_PDB 34.6142% -18 - C1 -6JNO - RXRA_HUMAN -
19 PsiBlast_PDB 34.5042% -17 - C1 -4N8R - RXRA_HUMAN -
13 PsiBlast_PDB 33.7642% -14 - C1 -5ZQU 5.2 RXRA_HUMAN
20 PsiBlast_PDB 33.4042% -16 - C1 -5TBP - RXRA_HUMAN -
18 PsiBlast_PDB 33.0142% -11 * C1 *4N5G - RXRA_HUMAN -
7 PsiBlast_PDB 26.9443% -13 - C1 -2GL8 - RXRG_HUMAN -
9 PsiBlast_PDB 25.0644% -42 - C1 -3EYB - ? -
15 PsiBlast_PDB 13.6895%-104 - C1 -2EBL - COT1_HUMAN -