@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR5A2_LRH1: (2021-05-27 )
MSSNSDTGDLQESLKHGLTPIGAGLPDRHGSPIPARGRLVMLPKVETEALGLARSHGEQGQMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKRA

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

N1V_A_3(6OQX)

[Raw transfer]



N2J_A_3(6OQY)

[Raw transfer]



71W_A_3(5SYZ)

[Raw transfer]



N27_A_3(6OR1)

[Raw transfer]



RJW_A_3(5UNJ)

[Raw transfer]



EPH_B_5(4DOR)

[Raw transfer]



470_A_5(3PLZ)
NR5A2_HUMAN
[Raw transfer]



RJW_A_3(5L11)

[Raw transfer]



QY4_A_3(6VIF)

[Raw transfer]



QU7_A_3(6VC2)

[Raw transfer]



EPH_E_16(4PLE)
NR5A2_HUMAN
[Raw transfer]



EPH_C_13(4PLE)
NR5A2_HUMAN
[Raw transfer]



EPH_F_6(1YUC)

[Raw transfer]



EPH_A_5(4ONI)
NR5A2_HUMAN
[Raw transfer]



EPH_A_9(4PLE)
NR5A2_HUMAN
[Raw transfer]



P6L_B_3(3TX7)
NR5A2_HUMAN
[Raw transfer]



EPH_G_22(4PLE)

[Raw transfer]



470_B_7(3PLZ)

[Raw transfer]



P3A_D_4(1ZDU)

[Raw transfer]



P6L_D_4(1YOK)

[Raw transfer]



P6L_B_9(4ONI)

[Raw transfer]



PIZ_A_3(4RWV)

[Raw transfer]



PLC_A_6(4DOS)

[Raw transfer]
11 PsiBlast_PDB 86.0999%-164 - C1 -6OQX 8.1
2 PsiBlast_PDB 83.6399%-160 - C1 -1YUC - NR5A2_HUMAN -
27 Blastp_CBE 83.2199%-171 - C1 -6VIF 8.8
26 Blastp_CBE 82.0899%-159 * C1 *4PLE 11.8 NR5A2_HUMAN
17 PsiBlast_PDB 81.9699%-156 - C1 -4DOS 9.7
4 PsiBlast_PDB 81.69100%-155 - C1 -4ONI 10.7 NR5A2_HUMAN
28 Blastp_CBE 81.2099%-166 - C1 -6VC2 8.5
25 Blastp_CBE 81.2099%-158 - C1 -4PLE 12.0 NR5A2_HUMAN
14 PsiBlast_PDB 81.1899%-170 - C1 -1YOK 11.7
7 PsiBlast_PDB 80.9599%-158 - C1 -4PLD - -
8 PsiBlast_PDB 80.0299%-155 - C1 -4PLE 11.6 NR5A2_HUMAN
24 Blastp_CBE 79.4199%-155 - C1 -4PLE 12.1
13 PsiBlast_PDB 79.0699%-169 - C1 -6OR1 8.7
22 Blastp_CBE 78.0199%-154 - C1 -1YUC 11.1
16 PsiBlast_PDB 77.8699%-161 - C1 -5SYZ 7.8
23 Blastp_CBE 77.65100%-148 - C1 -4ONI 11.2
29 Blastp_CBE 76.9299%-157 - C1 -3PLZ 8.6
21 Blastp_CBE 76.6199%-150 - C1 -4DOR 11.4
5 PsiBlast_PDB 76.6099%-148 - C1 -4RWV 10.6
9 PsiBlast_PDB 75.0499%-164 - C1 -5L11 8.1
12 PsiBlast_PDB 74.7999%-163 - C1 -6OQY 8.2
6 PsiBlast_PDB 72.97100%-166 - C1 -1ZDU 12.2
15 PsiBlast_PDB 69.8399%-166 - C1 -3PLZ 8.2 NR5A2_HUMAN
10 PsiBlast_PDB 62.3699%-172 - C1 -5UNJ 8.2
1 PsiBlast_PDB 38.4599%-160 - C1 -3TX7 11.5 NR5A2_HUMAN