@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : X_NR1I1_VDR: (2019-06-04 )
MEFMAATTSIADTDMEFDKNVPRICGVCGDKATGFHFNAMTCEGCKGFFRRSMKRKAMFTCPFNGDCRITKDNRRHCQSCRLKRCVDIGMMKEFILTDEEVQRKRQMINKRKSEEALKESMRPKISDEQQKMIDILLEAHRKTFDTTYSDFNKFRPPVRENVDPFRRITRSSSVHTQGSPSEDSDVFTSSPDSSEHGFFSASLFGQFEYSSMGGKSGELSMLPHIADLVSYSIQKIIGFAKMIPGFRDLIAEDQIALLKSSVIEVIMLRSNQSFSLDDMSWTCGSEDFKYKVDDVTQAGHNMELLEPLVKFQVGLKKLDLHEEEHVLLMAICILSPDRPGLQDKALVESIQDRLSSTLQTYILCKHPPPGSRLLYAKMIQKLADLRSLNEEHSKQYRSISFLPEHSMKLTPLMLEVFSDEIP

Atome Classification :

(108 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

VHW_A_2(3VHW)
VDR_HUMAN
[Raw transfer]




TFY_A_2(4ITF)
VDR_HUMAN
[Raw transfer]




FMV_A_2(3OGT)
VDR_HUMAN
[Raw transfer]




TEY_A_2(4ITE)
VDR_HUMAN
[Raw transfer]




O1C_B_2(2HB7)
VDR_HUMAN
[Raw transfer]




90L_A_2(5YSY)
VDR_HUMAN
[Raw transfer]




FMV_A_2(3TKC)
?
[Raw transfer]




90O_A_2(5YT2)
VDR_HUMAN
[Raw transfer]




VDA_A_3(2ZL9)
VDR_RAT
[Raw transfer]




ED9_A_2(3WGP)
VDR_HUMAN
[Raw transfer]




C3O_B_2(2HAS)
VDR_HUMAN
[Raw transfer]




9CW_A_3(5NMA)
VDRA_DANRE
[Raw transfer]




E0E_A_3(6FO9)
VDRA_DANRE
[Raw transfer]




VDX_C_3(2HC4)
VDRA_DANRE
[Raw transfer]




91W_A_3(5NKY)
VDRA_DANRE
[Raw transfer]




VDB_A_3(2ZLA)
VDR_RAT
[Raw transfer]




BIV_C_3(2HCD)
VDRA_DANRE
[Raw transfer]




OCC_B_2(2HAR)
VDR_HUMAN
[Raw transfer]




8J0_A_3(5XZF)
VDR_RAT
[Raw transfer]




MCZ_A_2(3B0T)
VDR_HUMAN
[Raw transfer]




2KB_A_2(5GT4)
VDR_HUMAN
[Raw transfer]




E05_A_3(6FOD)
VDRA_DANRE
[Raw transfer]




CA9_A_2(3AUQ)
VDR_HUMAN
[Raw transfer]




MVD_B_2(2HB8)
VDR_HUMAN
[Raw transfer]




DZW_A_3(6FOB)
VDRA_DANRE
[Raw transfer]




VDX_C_3(1RK3)
VDR_RAT
[Raw transfer]




VDX_B_2(1DB1)
VDR_HUMAN
[Raw transfer]




VD5_A_3(2O4R)
VDR_RAT
[Raw transfer]




C33_B_2(2HAM)
VDR_HUMAN
[Raw transfer]




TX5_B_2(1TXI)
VDR_HUMAN
[Raw transfer]




YSD_A_3(3VRV)
VDR_RAT
[Raw transfer]




TEJ_A_2(3A2I)
VDR_HUMAN
[Raw transfer]




KH1_B_2(1IE8)
VDR_HUMAN
[Raw transfer]




XE4_C_3(2HBH)
VDRA_DANRE
[Raw transfer]




DS6_A_2(3AZ3)
VDR_HUMAN
[Raw transfer]




CA9_A_2(3AUR)
VDR_HUMAN
[Raw transfer]




LX3_A_3(6FO7)
VDRA_DANRE
[Raw transfer]




ZNE_A_2(3KPZ)
VDR_HUMAN
[Raw transfer]




VDX_A_2(3M7R)
VDR_HUMAN
[Raw transfer]




EIM_A_2(3AX8)
VDR_HUMAN
[Raw transfer]




YS5_A_3(3VRW)
VDR_RAT
[Raw transfer]




EB1_B_2(1S0Z)
VDR_HUMAN
[Raw transfer]




VDX_B_2(1IE9)
VDR_HUMAN
[Raw transfer]




90L_A_2(5YSY)
VDR_HUMAN
[Raw transfer]




VDP_A_5(5GIE)
VDR_RAT
[Raw transfer]




41W_A_2(3X36)
VDR_HUMAN
[Raw transfer]




VDP_A_3(5GID)
VDR_RAT
[Raw transfer]




YSV_A_3(5B41)
VDR_RAT
[Raw transfer]




484_A_3(4G20)
VDRA_DANRE
[Raw transfer]




VDX_A_3(4RUJ)
VDRA_DANRE
[Raw transfer]




YS3_A_3(3VRU)
VDR_RAT
[Raw transfer]




ZYD_A_2(3P8X)
VDR_HUMAN
[Raw transfer]




8VM_A_2(5V39)
VDR_HUMAN
[Raw transfer]




COV_A_2(3CS4)
VDR_HUMAN
[Raw transfer]




23R_X_2(3A40)
VDR_HUMAN
[Raw transfer]




VD4_A_3(2O4J)
VDR_RAT
[Raw transfer]




VDZ_A_3(1RJK)
VDR_RAT
[Raw transfer]




8J3_A_3(5XZH)
VDR_RAT
[Raw transfer]




3AJ_A_2(3WWR)
VDR_HUMAN
[Raw transfer]




TEJ_A_3(3A2H)
VDR_RAT
[Raw transfer]




BIV_A_3(4IA7)
VDRA_DANRE
[Raw transfer]




BIV_X_3(4RUO)
VDRA_DANRE
[Raw transfer]




0VK_A_3(4G1D)
VDRA_DANRE
[Raw transfer]




0CO_A_2(3CS6)
VDR_HUMAN
[Raw transfer]




MCZ_A_2(3B0T)
VDR_HUMAN
[Raw transfer]




2MV_X_2(3A3Z)
VDR_HUMAN
[Raw transfer]




MC9_B_2(1S19)
VDR_HUMAN
[Raw transfer]




BIV_A_3(4IA2)
VDRA_DANRE
[Raw transfer]




YW2_A_3(4YNK)
VDR_RAT
[Raw transfer]




0S4_A_3(4FHI)
VDRA_DANRE
[Raw transfer]




0VO_A_3(4G1Y)
VDRA_DANRE
[Raw transfer]




VDP_D_6(5GIE)
VDR_RAT
[Raw transfer]




BIV_A_3(4IA3)
VDRA_DANRE
[Raw transfer]




0VP_A_3(4G21)
VDRA_DANRE
[Raw transfer]




VDP_A_3(5GID)
VDR_RAT
[Raw transfer]




3EV_A_2(3A78)
VDR_HUMAN
[Raw transfer]




DS2_A_2(3AZ1)
VDR_HUMAN
[Raw transfer]




DS3_A_2(3AZ2)
VDR_HUMAN
[Raw transfer]




41V_A_2(3X31)
VDR_HUMAN
[Raw transfer]




BIV_A_3(4IA1)
VDRA_DANRE
[Raw transfer]




0VP_A_3(4G1Z)
VDRA_DANRE
[Raw transfer]




VD4_A_3(2O4J)
VDR_RAT
[Raw transfer]




BIV_A_3(4IA2)
VDRA_DANRE
[Raw transfer]




8FF_A_3(5XUQ)
VDR_RAT
[Raw transfer]




TEJ_A_2(3A2J)
VDR_HUMAN
[Raw transfer]




0U3_A_3(4FHH)
VDRA_DANRE
[Raw transfer]




AYK_A_3(5OW7)
VDRA_DANRE
[Raw transfer]




DLC_A_3(5GIC)
VDR_RAT
[Raw transfer]




8C0_A_3(5XPM)
VDR_RAT
[Raw transfer]




6VH_A_3(5LGA)
VDRA_DANRE
[Raw transfer]




0VQ_A_3(4G2H)
VDRA_DANRE
[Raw transfer]




0VQ_A_2(4G2I)
VDR_HUMAN
[Raw transfer]




6DS_A_2(3W0C)
VDR_HUMAN
[Raw transfer]




AYT_A_3(5OW9)
VDRA_DANRE
[Raw transfer]




H97_A_3(3O1E)
VDRA_DANRE
[Raw transfer]




H97_A_3(4RUP)
VDRA_DANRE
[Raw transfer]




C5D_A_4(3DR1)
VDRA_DANRE
[Raw transfer]




B0B_A_3(5OWD)
VDRA_DANRE
[Raw transfer]




DS4_A_2(3W0Y)
VDR_HUMAN
[Raw transfer]




DS5_A_2(3W0A)
VDR_HUMAN
[Raw transfer]




G72_A_3(3O1D)
VDRA_DANRE
[Raw transfer]




9KR_A_3(5ZWF)
VDR_RAT
[Raw transfer]




9KX_A_3(5ZWH)
VDR_RAT
[Raw transfer]




4OA_C_3(4Q0A)
VDRA_DANRE
[Raw transfer]




4OA_C_3(4Q0A)
VDRA_DANRE
[Raw transfer]




10S_A_3(3VJS)
VDR_RAT
[Raw transfer]




10R_A_3(3VJT)
VDR_RAT
[Raw transfer]




M7E_A_3(5E7V)
VDRA_DANRE
[Raw transfer]




31 Blastp_CBE 92.5765%-116 - C8 -5V39 10.5 VDR_HUMAN
94 Blastp_CBE 92.3965%-121 - C8 -3A2J 10.1 VDR_HUMAN
24 Blastp_CBE 92.3566%-129 - C8 -3X31 10.0 VDR_HUMAN
25 Blastp_CBE 92.2366%-122 - C8 -3WWR 11.4 VDR_HUMAN
27 Blastp_CBE 91.9766%-119 - C8 -3AX8 10.9 VDR_HUMAN
20 PsiBlast_PDB 91.9265%-116 - C8 -3A40 11.6 VDR_HUMAN
23 Blastp_CBE 91.9066%-119 - C8 -3X36 10.6 VDR_HUMAN
21 Blastp_CBE 91.8066%-119 - C8 -4ITF 13.0 VDR_HUMAN
22 Blastp_CBE 91.7466%-124 - C8 -4ITE 12.4 VDR_HUMAN
28 Blastp_CBE 91.7166%-121 - C8 -3AUR 10.4 VDR_HUMAN
5 PsiBlast_PDB 91.6665%-121 - C8 -3KPZ 10.7 VDR_HUMAN
26 Blastp_CBE 91.6466%-114 - C8 -3VHW 12.4 VDR_HUMAN
40 Blastp_CBE 91.5866%-122 - C8 -5GT4 11.4 VDR_HUMAN
39 Blastp_CBE 91.5366%-119 - C8 -5YSY 11.1 VDR_HUMAN
38 Blastp_CBE 91.5366%-118 - C8 -5YT2 11.6 VDR_HUMAN
19 PsiBlast_PDB 91.5365%-117 - C8 -3A3Z 11.4 VDR_HUMAN
16 PsiBlast_PDB 91.4865%-118 - C8 -2HB8 11.1 VDR_HUMAN
6 PsiBlast_PDB 91.4865%-115 - C8 -3TKC 10.8 ?
29 Blastp_CBE 91.4766%-120 - C8 -3AUQ 10.6 VDR_HUMAN
18 PsiBlast_PDB 91.3365%-115 - C8 -3CS6 11.2 VDR_HUMAN
7 PsiBlast_PDB 91.3365%-122 - C8 -4G2I 11.3 VDR_HUMAN
4 PsiBlast_PDB 91.2365%-115 - C8 -3OGT 10.9 VDR_HUMAN
9 PsiBlast_PDB 91.1865%-120 - C8 -1S0Z 11.3 VDR_HUMAN
3 PsiBlast_PDB 91.1465%-115 - C8 -1IE9 11.0 VDR_HUMAN
36 Blastp_CBE 91.1065%-119 - C8 -3A2I 10.4 VDR_HUMAN
15 PsiBlast_PDB 91.0065%-117 - C8 -2HB7 11.9 VDR_HUMAN
11 PsiBlast_PDB 90.8965%-122 - C8 -1TXI 10.4 VDR_HUMAN
13 PsiBlast_PDB 90.8865%-121 - C8 -2HAR 12.0 VDR_HUMAN
56 Blastp_CBE 90.8766%-122 - C8 -3B0T 10.7 VDR_HUMAN
8 PsiBlast_PDB 90.8465%-115 - C8 -3P8X 9.3 VDR_HUMAN
17 PsiBlast_PDB 90.7865%-115 - C8 -3CS4 11.2 VDR_HUMAN
14 PsiBlast_PDB 90.7465%-118 - C8 -2HAS 11.8 VDR_HUMAN
12 PsiBlast_PDB 90.6965%-118 - C8 -2HAM 11.7 VDR_HUMAN
30 Blastp_CBE 90.6366%-116 - C8 -3A78 10.6 VDR_HUMAN
10 PsiBlast_PDB 90.6265%-123 - C8 -1S19 10.6 VDR_HUMAN
55 Blastp_CBE 90.5965%-127 - C8 -2ZL9 11.2 VDR_RAT
57 Blastp_CBE 90.2666%-123 - C8 -3WGP 11.7 VDR_HUMAN
1 PsiBlast_PDB 90.2165%-125 - C8 -1DB1 10.6 VDR_HUMAN
63 Blastp_CBE 90.1466%-124 - C8 -3AZ1 9.2 VDR_HUMAN
59 Blastp_CBE 90.1266%-127 - C8 -3W0C 12.4 VDR_HUMAN
58 Blastp_CBE 90.0066%-125 - C8 -3W0Y 12.9 VDR_HUMAN
60 Blastp_CBE 89.9666%-128 - C8 -3W0A 12.0 VDR_HUMAN
34 Blastp_CBE 89.8265%-129 - C8 -1RK3 10.9 VDR_RAT
62 Blastp_CBE 89.7366%-126 - C8 -3AZ2 9.8 VDR_HUMAN
2 PsiBlast_PDB 89.7065%-120 - C8 -1IE8 10.9 VDR_HUMAN
95 Blastp_CBE 89.4666%-117 - C8 -3M7R 9.0 VDR_HUMAN
43 Blastp_CBE 89.4665%-125 - C8 -5XZH 11.2 VDR_RAT
52 Blastp_CBE 89.3865%-123 - C8 -3VJT 8.1 VDR_RAT
97 Blastp_CBE 89.2665%-129 - C8 -5GIE 12.2 VDR_RAT
32 Blastp_CBE 89.1865%-119 - C8 -2O4R 10.9 VDR_RAT
35 Blastp_CBE 89.1365%-119 - C8 -1RJK 11.4 VDR_RAT
33 Blastp_CBE 89.1065%-123 - C8 -2O4J 11.2 VDR_RAT
49 Blastp_CBE 89.0765%-132 - C8 -3VRW 11.1 VDR_RAT
47 Blastp_CBE 89.0765%-123 - C8 -5B41 10.9 VDR_RAT
61 Blastp_CBE 89.0666%-124 - C8 -3AZ3 10.8 VDR_HUMAN
53 Blastp_CBE 89.0665%-118 - C8 -3VJS 7.9 VDR_RAT
102 Blastp_CBE 89.0265%-131 - C8 -5GID 11.5 VDR_RAT
44 Blastp_CBE 88.7965%-126 - C8 -5XZF 11.8 VDR_RAT
50 Blastp_CBE 88.7065%-131 - C8 -3VRV 10.6 VDR_RAT
48 Blastp_CBE 88.6565%-112 - C8 -4YNK 12.1 VDR_RAT
42 Blastp_CBE 88.5765%-122 - C8 -5ZWF 7.5 VDR_RAT
46 Blastp_CBE 88.5365%-123 - C8 -5XPM 11.9 VDR_RAT
54 Blastp_CBE 88.4065%-123 - C8 -2ZLA 10.8 VDR_RAT
41 Blastp_CBE 88.3365%-132 - C8 -5ZWH 6.6 VDR_RAT
101 Blastp_CBE 88.3065%-128 - C8 -5GIC 10.2 VDR_RAT
37 Blastp_CBE 88.2665%-120 - C8 -3A2H 10.3 VDR_RAT
51 Blastp_CBE 88.1965%-126 - C8 -3VRU 9.7 VDR_RAT
45 Blastp_CBE 88.0665%-125 - C8 -5XUQ 11.6 VDR_RAT
80 Blastp_CBE 87.1466%-137 - C8 -5LGA 12.1 VDRA_DANRE
64 Blastp_CBE 86.7666%-133 - C8 -5OWD 10.1 VDRA_DANRE
70 Blastp_CBE 86.1566%-135 - C8 -3O1E 12.4 VDRA_DANRE
96 Blastp_CBE 86.0865%-142 - C8 -5GIE 11.2 VDR_RAT
65 Blastp_CBE 83.0266% -38 - C8 -5OW9 10.1 VDRA_DANRE
107 HHSearch 83.0083%-160 - C8 -3B0T 10.0 VDR_HUMAN
108 HHSearch 82.7482%-160 - C8 -5YSY 9.8 VDR_HUMAN
110 HHSearch 82.6882%-143 - C8 -2O4J 10.4 VDR_RAT
81 Blastp_CBE 82.6866% -34 - C8 -5E7V 11.2 VDRA_DANRE
66 Blastp_CBE 82.6566% -38 - C8 -5OW7 9.6 VDRA_DANRE
84 Blastp_CBE 82.5966% -34 - C8 -4IA2 12.2 VDRA_DANRE
113 HHSearch 82.4982%-153 * C8 *5GID 11.1 VDR_RAT
93 Blastp_CBE 82.3066% -38 - C8 -4FHH 9.3 VDRA_DANRE
76 Blastp_CBE 82.1766% -38 - C8 -6FOD 10.7 VDRA_DANRE
77 Blastp_CBE 82.1066% -33 - C8 -6FOB 10.9 VDRA_DANRE
67 Blastp_CBE 82.0666% -29 - C8 -5NMA 10.0 VDRA_DANRE
74 Blastp_CBE 82.0366% -36 - C8 -2HC4 10.7 VDRA_DANRE
98 Blastp_CBE 81.9866% -35 - C8 -4RUP 12.6 VDRA_DANRE
71 Blastp_CBE 81.9866% -31 - C8 -3O1D 12.5 VDRA_DANRE
99 Blastp_CBE 81.9766% -37 - C8 -4RUO 12.2 VDRA_DANRE
100 Blastp_CBE 81.8966% -32 - C8 -4RUJ 10.7 VDRA_DANRE
85 Blastp_CBE 81.8266% -35 - C8 -4IA1 12.1 VDRA_DANRE
73 Blastp_CBE 81.7566% -38 - C8 -2HCD 12.5 VDRA_DANRE
92 Blastp_CBE 81.7366% -41 - C8 -4FHI 9.3 VDRA_DANRE
79 Blastp_CBE 81.7266% -35 - C8 -6FO7 11.2 VDRA_DANRE
68 Blastp_CBE 81.6766% -35 - C8 -5NKY 10.8 VDRA_DANRE
82 Blastp_CBE 81.6266% -34 - C8 -4IA7 12.3 VDRA_DANRE
88 Blastp_CBE 81.5566% -45 - C8 -4G20 10.3 VDRA_DANRE
90 Blastp_CBE 81.5366% -40 - C8 -4G1Y 9.1 VDRA_DANRE
78 Blastp_CBE 81.4766% -33 - C8 -6FO9 10.6 VDRA_DANRE
69 Blastp_CBE 81.3866% -35 - C8 -4Q0A 7.4 VDRA_DANRE
75 Blastp_CBE 81.2966% -31 - C8 -2HBH 10.5 VDRA_DANRE
72 Blastp_CBE 81.1566% -35 - C8 -3DR1 10.9 VDRA_DANRE
89 Blastp_CBE 81.1366% -40 - C8 -4G1Z 10.4 VDRA_DANRE
87 Blastp_CBE 81.0366% -34 - C8 -4G21 9.9 VDRA_DANRE
83 Blastp_CBE 80.9966% -31 - C8 -4IA3 12.3 VDRA_DANRE
86 Blastp_CBE 80.7266% -35 - C8 -4G2H 11.1 VDRA_DANRE
91 Blastp_CBE 80.6566% -36 - C8 -4G1D 10.0 VDRA_DANRE
106 HHSearch 79.7180%-142 - C8 -4IA2 11.7 VDRA_DANRE
105 HHSearch 79.4480%-143 - C8 -4Q0A 7.2 VDRA_DANRE