@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : X_NR2B1_RXRA: (2019-06-04 )
MSSAAMDTKHFLPLGGRTCADTLRCTTSWTAGYDFSSQVNSSSLSSSGLRGSMTAPLLHPSLGNSGLNNSLGSPTQLPSPLSSPINGMGPPFSVISPPLGPSMAIPSTPGLGYGTGSPQIHSPMNSVSSTEDIKPPPGINGILKVPMHPSGAMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKDCMIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKERNENEVESSNSANEDMPVEKILEAEHAVEPKTETYTEANMGLAPNSPSDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPLEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT

Atome Classification :

(96 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

K09_A_5(4N5G)
?
[Raw transfer]




K08_A_5(4N8R)
?
[Raw transfer]




K08_D_6(4N8R)
?
[Raw transfer]




3T2_A_3(4RME)
RXRA_HUMAN
[Raw transfer]




R4M_A_3(4M8H)
RXRA_HUMAN
[Raw transfer]




2VZ_A_3(4PP3)
RXRA_HUMAN
[Raw transfer]




3SW_A_3(4RMD)
RXRA_HUMAN
[Raw transfer]




REA_K_11(1XDK)
RXRA_MOUSE
[Raw transfer]




REA_I_9(1XDK)
RXRA_MOUSE
[Raw transfer]




29V_A_3(4M8E)
RXRA_HUMAN
[Raw transfer]




9RA_A_3(4K6I)
?
[Raw transfer]




2W0_A_3(4PP5)
RXRA_HUMAN
[Raw transfer]




2VP_A_3(4POJ)
RXRA_HUMAN
[Raw transfer]




3SV_A_3(4RMC)
RXRA_HUMAN
[Raw transfer]




4TN_A_3(2P1U)
RXRA_HUMAN
[Raw transfer]




7BE_A_3(5LYQ)
RXRA_HUMAN
[Raw transfer]




REA_J_10(1FM6)
RXRA_HUMAN
[Raw transfer]




BM6_K_11(1MZN)
RXRA_HUMAN
[Raw transfer]




BM6_L_12(1MZN)
RXRA_HUMAN
[Raw transfer]




HXA_E_5(1MV9)
RXRA_HUMAN
[Raw transfer]




1O8_A_3(4K4J)
?
[Raw transfer]




BM6_J_10(1MZN)
RXRA_HUMAN
[Raw transfer]




REA_I_9(1XIU)
RXR_BIOGL
[Raw transfer]




BM6_I_9(1MZN)
RXRA_HUMAN
[Raw transfer]




3RB_A_3(4RFW)
RXRA_HUMAN
[Raw transfer]




3TN_A_3(2P1T)
RXRA_HUMAN
[Raw transfer]




2E3_A_3(3FUG)
RXRA_HUMAN
[Raw transfer]




4CU_A_3(5MKJ)
RXRA_HUMAN
[Raw transfer]




BM6_E_5(1MVC)
RXRA_HUMAN
[Raw transfer]




REA_I_9(1FM6)
RXRA_HUMAN
[Raw transfer]




5TN_A_3(2P1V)
RXRA_HUMAN
[Raw transfer]




4XW_A_3(4ZSH)
RXRA_HUMAN
[Raw transfer]




21P_A_5(2ZY0)
RXRA_HUMAN
[Raw transfer]




REA_A_3(3OAP)
RXRA_HUMAN
[Raw transfer]




4XW_A_3(4ZSH)
RXRA_HUMAN
[Raw transfer]




I5W_A_5(5MK4)
RXRA_HUMAN
[Raw transfer]




9RA_A_5(3H0A)

[Raw transfer]




9CR_A_5(5JI0)
RXRA_HUMAN
[Raw transfer]




REA_D_4(1FBY)
RXRA_HUMAN
[Raw transfer]




L79_E_5(1RDT)
RXRA_HUMAN
[Raw transfer]




REA_C_3(1FBY)
RXRA_HUMAN
[Raw transfer]




5LO_A_3(5EC9)
?
[Raw transfer]




P26_A_3(2ZXZ)
RXRA_HUMAN
[Raw transfer]




9RA_A_5(3H0A)

[Raw transfer]




754_A_4(3A9E)
RXRA_MOUSE
[Raw transfer]




5LO_A_3(5EC9)
?
[Raw transfer]




9CR_D_10(6A5Z)
?
[Raw transfer]




REA_F_6(1FM9)
RXRA_HUMAN
[Raw transfer]




21P_C_6(2ZY0)
RXRA_HUMAN
[Raw transfer]




REA_K_11(1XIU)
RXR_BIOGL
[Raw transfer]




REA_K_11(1XIU)
RXR_BIOGL
[Raw transfer]




2VR_A_3(4POH)
RXRA_HUMAN
[Raw transfer]




REA_E_5(1K74)
RXRA_HUMAN
[Raw transfer]




OLA_D_4(1DKF)
RXRA_MOUSE
[Raw transfer]




I5W_C_7(5MK4)
?
[Raw transfer]




9CR_C_10(5Z12)
RXRA_HUMAN
[Raw transfer]




9CR_L_12(6A5Z)
?
[Raw transfer]




REA_A_11(3E00)
RXRA_HUMAN
[Raw transfer]




LG2_A_5(1H9U)
RXRB_HUMAN
[Raw transfer]




9CR_D_7(6A5Y)
?
[Raw transfer]




9CR_B_12(5Z12)
RXRA_HUMAN
[Raw transfer]




2QO_A_3(4OC7)
RXRA_HUMAN
[Raw transfer]




REA_B_4(3UVV)
RXRA_HUMAN
[Raw transfer]




F15_A_11(1XV9)
RXRA_HUMAN
[Raw transfer]




SJZ_A_3(5MMW)

[Raw transfer]




LG2_B_8(1H9U)
RXRB_HUMAN
[Raw transfer]




LG2_C_11(1H9U)
RXRB_HUMAN
[Raw transfer]




MEI_F_6(1UHL)

[Raw transfer]




F15_C_9(1XVP)
RXRA_HUMAN
[Raw transfer]




REA_A_11(3DZU)
RXRA_HUMAN
[Raw transfer]




LG2_D_13(1H9U)

[Raw transfer]




7O0_A_3(5MJ5)
RXRA_HUMAN
[Raw transfer]




9CR_A_9(5UAN)
RXRA_HUMAN
[Raw transfer]




F15_C_10(1XV9)
RXRA_HUMAN
[Raw transfer]




REA_C_7(3FC6)
RXRA_HUMAN
[Raw transfer]




F15_A_10(1XVP)
RXRA_HUMAN
[Raw transfer]




TBY_A_3(3E94)
RXRA_HUMAN
[Raw transfer]




T9T_A_3(3KWY)
RXRA_HUMAN
[Raw transfer]




LX8_A_3(3PCU)
RXRA_HUMAN
[Raw transfer]




MLO_A_5(3R5M)
RXRA_HUMAN
[Raw transfer]




MLO_C_6(3R5M)
RXRA_HUMAN
[Raw transfer]




BGV_C_6(3OZJ)
RXRA_HUMAN
[Raw transfer]




9HF_C_15(5ZQU)
?
[Raw transfer]




REA_E_5(1G5Y)
RXRA_HUMAN
[Raw transfer]




K08_A_5(4N8R)
RXRA_HUMAN
[Raw transfer]




REA_F_6(1G5Y)
RXRA_HUMAN
[Raw transfer]




K08_D_6(4N8R)
?
[Raw transfer]




BGV_A_5(3OZJ)
RXRA_HUMAN
[Raw transfer]




K09_A_5(4N5G)
RXRA_HUMAN
[Raw transfer]




K09_D_6(4N5G)
?
[Raw transfer]




RHN_A_7(3R2A)
RXRA_HUMAN
[Raw transfer]




RHN_C_8(3R2A)
RXRA_HUMAN
[Raw transfer]




9HF_A_6(5ZQU)
?
[Raw transfer]




NEQ_U_4(4OZT)
?
[Raw transfer]




9HF_D_19(5ZQU)
?
[Raw transfer]




9HF_D_19(5ZQU)
?
[Raw transfer]




4 PsiBlast_PDB 88.7194%-138 - C2 -5UAN 7.2 RXRA_HUMAN
2 PsiBlast_PDB 88.7088%-125 - C2 -3E00 7.7 RXRA_HUMAN
1 PsiBlast_PDB 88.5588%-126 - C2 -3DZU 7.2 RXRA_HUMAN
64 Blastp_CBE 80.2097%-110 - C2 -1K74 7.8 RXRA_HUMAN
74 Blastp_CBE 80.1297%-115 - C2 -1XVP 5.8 RXRA_HUMAN
67 Blastp_CBE 80.0097%-113 - C2 -1FM9 8.7 RXRA_HUMAN
69 Blastp_CBE 78.9997%-117 - C2 -1FM6 8.1 RXRA_HUMAN
68 Blastp_CBE 78.6497%-116 - C2 -1FM6 8.5 RXRA_HUMAN
77 Blastp_CBE 78.4297%-107 - C2 -1XV9 6.0 RXRA_HUMAN
76 Blastp_CBE 78.4297%-112 - C2 -1XV9 5.4 RXRA_HUMAN
102 Blastp_CBE 78.2997%-133 - C2 -4K4J 8.3 ?
75 Blastp_CBE 78.1197%-104 - C2 -1XVP 5.4 RXRA_HUMAN
103 Blastp_CBE 77.9297%-129 - C2 -3OAP 7.7 RXRA_HUMAN
58 Blastp_CBE 77.8597%-141 - C2 -3OZJ 2.7 RXRA_HUMAN
96 Blastp_CBE 77.7697%-130 - C2 -4PP3 8.8 RXRA_HUMAN
84 Blastp_CBE 77.7697%-129 - C2 -4RME 9.4 RXRA_HUMAN
104 Blastp_CBE 77.6997%-140 - C2 -5MKJ 8.6 RXRA_HUMAN
31 Blastp_CBE 77.6696%-129 - C2 -2ZY0 9.2 RXRA_HUMAN
85 Blastp_CBE 77.6197%-129 - C2 -4RMD 9.9 RXRA_HUMAN
142 HHSearch 77.5697%-130 - C2 -4ZSH 8.1 RXRA_HUMAN
98 Blastp_CBE 77.5197%-134 - C2 -4POH 8.2 RXRA_HUMAN
100 Blastp_CBE 77.4997%-135 - C2 -4M8E 8.4 RXRA_HUMAN
108 Blastp_CBE 77.4697%-130 - C2 -5MK4 9.2 RXRA_HUMAN
25 Blastp_CBE 77.4896%-130 - C2 -3R5M 7.2 RXRA_HUMAN
16 PsiBlast_PDB 77.4795%-129 - C2 -2ZY0 9.1 RXRA_HUMAN
72 Blastp_CBE 77.4697%-130 - C2 -1XDK 7.7 RXRA_MOUSE
23 Blastp_CBE 77.4296%-130 - C2 -4ZSH 8.1 RXRA_HUMAN
12 PsiBlast_PDB 77.4295%-144 - C2 -2P1U 10.1 RXRA_HUMAN
15 PsiBlast_PDB 77.4095%-139 - C2 -2ZXZ 9.3 RXRA_HUMAN
97 Blastp_CBE 77.3397%-134 - C2 -4POJ 8.9 RXRA_HUMAN
95 Blastp_CBE 77.3397%-129 - C2 -4PP5 8.9 RXRA_HUMAN
93 Blastp_CBE 77.3197%-126 - C2 -4RMC 8.2 RXRA_HUMAN
56 Blastp_CBE 77.2997%-127 - C2 -6A5Z 8.6 ?
71 Blastp_CBE 77.2797%-131 - C2 -1XDK 7.6 RXRA_MOUSE
105 Blastp_CBE 77.2597%-141 - C2 -3PCU 4.7 RXRA_HUMAN
54 Blastp_CBE 77.2497%-135 - C2 -1RDT 9.8 RXRA_HUMAN
94 Blastp_CBE 77.2397%-135 - C2 -4RFW 8.1 RXRA_HUMAN
59 Blastp_CBE 77.2197%-131 - C2 -3OZJ 4.1 RXRA_HUMAN
9 PsiBlast_PDB 77.2195%-132 - C2 -1MVC 10.2 RXRA_HUMAN
11 PsiBlast_PDB 77.1695%-139 - C2 -2P1T 9.7 RXRA_HUMAN
32 Blastp_CBE 77.0896%-129 - C2 -1MZN 9.8 RXRA_HUMAN
22 Blastp_CBE 77.0796%-132 - C2 -5LYQ 10.6 RXRA_HUMAN
24 Blastp_CBE 77.0696%-142 - C2 -3R5M 6.6 RXRA_HUMAN
101 Blastp_CBE 77.0597%-130 - C2 -4K6I 9.4 ?
55 Blastp_CBE 77.0097%-139 - C2 -6A5Z 9.0 ?
52 Blastp_CBE 77.0097%-129 - C2 -3UVV 7.9 RXRA_HUMAN
34 Blastp_CBE 77.0096%-132 - C2 -1MZN 9.8 RXRA_HUMAN
13 PsiBlast_PDB 77.0095%-136 - C2 -2P1V 10.3 RXRA_HUMAN
6 PsiBlast_PDB 76.9795%-134 - C2 -4OC7 7.5 RXRA_HUMAN
99 Blastp_CBE 76.7697%-131 - C2 -4M8H 8.2 RXRA_HUMAN
49 Blastp_CBE 76.7596%-137 - C2 -3E94 5.8 RXRA_HUMAN
14 PsiBlast_PDB 76.7495%-137 - C2 -3FUG 9.7 RXRA_HUMAN
48 Blastp_CBE 76.6596%-140 - C2 -3KWY 7.5 RXRA_HUMAN
90 Blastp_CBE 76.6497%-137 - C2 -1DKF 7.4 RXRA_MOUSE
57 Blastp_CBE 76.6497%-136 - C2 -6A5Y 8.7 ?
109 Blastp_CBE 76.4997%-137 - C2 -5MJ5 9.6 RXRA_HUMAN
112 Blastp_CBE 76.4686%-144 - C2 -1UHL 5.8
92 Blastp_CBE 76.4097%-124 - C2 -5Z12 7.4 RXRA_HUMAN
10 PsiBlast_PDB 76.3395%-129 - C2 -1MZN 9.8 RXRA_HUMAN
106 Blastp_CBE 76.3297%-135 - C2 -5MMW 8.1
107 Blastp_CBE 76.0997%-128 - C2 -5MK4 9.3 ?
33 Blastp_CBE 76.0396%-130 - C2 -1MZN 9.9 RXRA_HUMAN
111 Blastp_CBE 75.9590%-140 - C2 -5EC9 10.2 ?
73 Blastp_CBE 75.6695%-120 - C2 -5JI0 7.0 RXRA_HUMAN
51 Blastp_CBE 75.6596%-118 - C2 -1FBY 8.0 RXRA_HUMAN
65 Blastp_CBE 75.0997%-129 - C2 -1G5Y 6.3 RXRA_HUMAN
50 Blastp_CBE 74.9596%-121 - C2 -1FBY 8.1 RXRA_HUMAN
8 PsiBlast_PDB 74.7895%-129 - C2 -1MV9 8.8 RXRA_HUMAN
66 Blastp_CBE 74.3397%-119 - C2 -1G5Y 6.6 RXRA_HUMAN
91 Blastp_CBE 74.0197%-137 - C2 -5Z12 8.0 RXRA_HUMAN
70 Blastp_CBE 73.7596%-113 - C2 -3A9E 9.2 RXRA_MOUSE
46 Blastp_CBE 73.1396%-144 - C2 -4N5G Error ?
152 HHSearch 72.7499%-156 - C2 -5EC9 10.1 ?
110 Blastp_CBE 72.1696%-113 - C2 -3H0A 8.2
141 HHSearch 72.1096%-117 - C2 -3H0A 8.2
20 PsiBlast_PDB 71.8495%-115 - C2 -3R2A 3.7 RXRA_HUMAN
41 Blastp_CBE 71.4996%-160 - C2 -4N8R 8.0 ?
42 Blastp_CBE 71.1096%-161 - C2 -4N8R Error ?
116 Blastp_CBE 71.0487%-153 - C2 -1H9U 9.0 RXRB_HUMAN
113 Blastp_CBE 71.0482%-116 - C2 -1XIU 8.1 RXR_BIOGL
118 Blastp_CBE 71.0187%-157 - C2 -1H9U 9.8 RXRB_HUMAN
115 Blastp_CBE 70.8987%-151 - C2 -1H9U 9.1
7 PsiBlast_PDB 70.8095%-157 - C2 -5ZQU 3.9 ?
27 Blastp_CBE 70.6396%-127 - C2 -3R2A 3.8 RXRA_HUMAN
117 Blastp_CBE 70.6087%-153 - C2 -1H9U 9.9 RXRB_HUMAN
35 Blastp_CBE 70.5496%-156 - C2 -5ZQU 4.1 ?
43 Blastp_CBE 70.2496%-157 - C2 -4N8R Error ?
44 Blastp_CBE 69.6396%-150 - C2 -4N8R 8.2 RXRA_HUMAN
45 Blastp_CBE 69.4996%-155 - C2 -4N5G 8.1 ?
37 Blastp_CBE 69.4296%-148 - C2 -5ZQU 3.5 ?
36 Blastp_CBE 69.2896%-152 - C2 -5ZQU 7.8 ?
114 Blastp_CBE 69.0882%-126 - C2 -1XIU 8.2 RXR_BIOGL
47 Blastp_CBE 68.8396%-160 - C2 -4N5G 8.4 RXRA_HUMAN
147 HHSearch 68.1286%-143 - C2 -1XIU 8.0 RXR_BIOGL
53 Blastp_CBE 67.6597%-120 - C2 -3FC6 7.9 RXRA_HUMAN
120 Blastp_CBE 66.1075%-155 - C2 -4OZT 2.9 ?