@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Z_NR1B3_ARGA: (2019-06-04 )
MFDCMEALGMGPRQLYDVTNRGACMLRKASPFYAGLDPFAWTGTASVRSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKDVKDEVIPPESYELSGELEELVNKVSKAHQETFPSLCQLGKYTTNSSSDHRIQLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPERVDRLQEPLLEALKIYARRRRPNKPHMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEAFEDQSESTEKKPEPEPPAPPPPALLTMKKEQEDEDDSWATENGSEPSPEEEDDDDEDGEEERGTDSDGEAWGGQEPNADVSRKSHGGRAQ

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

JYH_B_6(4JYH)
RARB_HUMAN
[Raw transfer]




1NY_B_7(4JYG)
RARB_HUMAN
[Raw transfer]




1NY_A_5(4JYG)
RARB_HUMAN
[Raw transfer]




394_A_2(1EXA)
RARG_HUMAN
[Raw transfer]




394_A_2(1EXA)
RARG_HUMAN
[Raw transfer]




184_A_2(1FCX)
RARG_HUMAN
[Raw transfer]




TTB_A_5(4DM6)
RARB_HUMAN
[Raw transfer]




REA_B_5(3A9E)
RARA_HUMAN
[Raw transfer]




TTB_A_5(4DM6)
RARB_HUMAN
[Raw transfer]




961_A_2(1EXX)
RARG_HUMAN
[Raw transfer]




JYH_A_5(4JYH)
RARB_HUMAN
[Raw transfer]




TTB_B_6(4DM6)
RARB_HUMAN
[Raw transfer]




564_A_2(1FCY)
RARG_HUMAN
[Raw transfer]




REA_L_12(1XDK)
RARB_MOUSE
[Raw transfer]




156_A_2(1FCZ)
RARG_HUMAN
[Raw transfer]




REA_B_2(3LBD)
RARG_HUMAN
[Raw transfer]




REA_J_10(1XDK)
RARB_MOUSE
[Raw transfer]




564_A_2(1FCY)
RARG_HUMAN
[Raw transfer]




9CR_A_2(5M24)
RARG_HUMAN
[Raw transfer]




REA_B_12(5UAN)
RARB_HUMAN
[Raw transfer]




254_A_2(1FD0)
RARG_HUMAN
[Raw transfer]




961_B_2(4LBD)
RARG_HUMAN
[Raw transfer]




EQN_A_3(3KMR)
RARA_HUMAN
[Raw transfer]




E9T_A_2(6FX0)
RARG_HUMAN
[Raw transfer]




JYI_A_5(4JYI)
RARB_HUMAN
[Raw transfer]




BMS_C_3(1DKF)
RARA_HUMAN
[Raw transfer]




TTB_B_2(1XAP)
RARB_HUMAN
[Raw transfer]




JYI_B_6(4JYI)
RARB_HUMAN
[Raw transfer]




REA_B_6(4DM8)
RARB_HUMAN
[Raw transfer]




REA_A_5(4DM8)
RARB_HUMAN
[Raw transfer]




EQO_B_5(3KMZ)
RARA_HUMAN
[Raw transfer]




EQO_A_10(3KMZ)
RARA_HUMAN
[Raw transfer]




LUF_C_6(4DQM)
RARA_HUMAN
[Raw transfer]




6Q7_A_2(5K13)
RARA_HUMAN
[Raw transfer]




LUF_A_5(4DQM)
RARA_HUMAN
[Raw transfer]




LUF_A_5(4DQM)
RARA_HUMAN
[Raw transfer]




2 PsiBlast_PDB 94.6881%-121 - C5 -5UAN 7.7 RARB_HUMAN
19 PsiBlast_PDB 83.9592%-135 - C5 -1FCZ 10.6 RARG_HUMAN
9 PsiBlast_PDB 83.9392%-128 - C5 -4LBD 10.6 RARG_HUMAN
18 PsiBlast_PDB 83.7692%-135 - C5 -1FCX 11.4 RARG_HUMAN
53 HHSearch 83.7593%-132 - C5 -1EXA 10.3 RARG_HUMAN
4 PsiBlast_PDB 83.7092%-130 - C5 -1EXA 10.3 RARG_HUMAN
17 PsiBlast_PDB 83.6792%-135 - C5 -1FCY 11.2 RARG_HUMAN
20 PsiBlast_PDB 83.5892%-135 - C5 -1FD0 11.0 RARG_HUMAN
55 HHSearch 83.5094%-138 - C5 -1FCY 11.2 RARG_HUMAN
5 PsiBlast_PDB 83.2992%-130 - C5 -1EXX 10.5 RARG_HUMAN
8 PsiBlast_PDB 83.2892%-122 - C5 -3LBD 8.8 RARG_HUMAN
6 PsiBlast_PDB 83.1592%-131 - C5 -5M24 8.9 RARG_HUMAN
1 PsiBlast_PDB 83.0385%-134 - C5 -6FX0 11.4 RARG_HUMAN
23 Blastp_CBE 82.3986%-131 - C5 -4DM6 10.1 RARB_HUMAN
11 PsiBlast_PDB 82.1485%-128 - C5 -4DM6 10.2 RARB_HUMAN
22 Blastp_CBE 81.9486%-127 - C5 -4DM8 8.6 RARB_HUMAN
26 Blastp_CBE 81.7885%-127 - C5 -4JYG 10.9 RARB_HUMAN
25 Blastp_CBE 81.7885%-135 - C5 -4JYH 10.1 RARB_HUMAN
16 PsiBlast_PDB 81.6185%-135 - C5 -4JYI 11.1 RARB_HUMAN
24 Blastp_CBE 81.5385%-132 - C5 -4JYI 11.3 RARB_HUMAN
13 PsiBlast_PDB 81.5281%-129 - C5 -3A9E 8.1 RARA_HUMAN
15 PsiBlast_PDB 81.4385%-138 - C5 -4JYH 9.9 RARB_HUMAN
14 PsiBlast_PDB 81.1985%-139 - C5 -4JYG 10.6 RARB_HUMAN
52 HHSearch 81.0287%-131 - C5 -4DM6 10.2 RARB_HUMAN
21 Blastp_CBE 80.3484%-122 - C5 -1XDK 8.7 RARB_MOUSE
3 PsiBlast_PDB 80.1683%-122 - C5 -1XDK 8.7 RARB_MOUSE
29 Blastp_CBE 80.0883%-128 - C5 -3KMR 9.8 RARA_HUMAN
33 Blastp_CBE 79.1285%-129 - C5 -4DQM 4.2 RARA_HUMAN
30 Blastp_CBE 78.6283%-134 - C5 -5K13 11.6 RARA_HUMAN
31 Blastp_CBE 74.6485%-140 - C5 -1DKF 10.3 RARA_HUMAN
28 Blastp_CBE 74.3983%-125 - C5 -3KMZ 11.1 RARA_HUMAN
12 PsiBlast_PDB 74.2585%-129 - C5 -4DM8 8.4 RARB_HUMAN
27 Blastp_CBE 74.2483%-126 - C5 -3KMZ 11.4 RARA_HUMAN
32 Blastp_CBE 73.2985%-134 - C5 -4DQM 6.2 RARA_HUMAN
10 PsiBlast_PDB 73.0985%-130 - C5 -1XAP 10.4 RARB_HUMAN
57 HHSearch 68.8988%-174 - C5 -4DQM 5.5 RARA_HUMAN