@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Z_NR1I1_VDRB: (2019-06-04 )
MESAVSTSTQVPDEFDRNVPRICGVCGDKATGFHFNAMTCEGCKGFFRRSMKRKASFTCPFNGSCTITKDNRRHCQACRLKRCLDIGMMKEFILTDEEVQRKKELIQRRKDEEAHREAQKPRLSDEQRNIIDTLVDAHHKTYDDSYSDFSRFRPPVREGPVTRSASRAASLHSLSDASSDSFSHSPESGDRKMNLSNLLMMYQEQGLSSSPDSKEEDGSSLSMLPHLADLVSYSIQKVIGFAKMIPGFRELTAEDQIALLKSSAIEVIMLRSNQSFSLEDMSWSCGGPEFKYCVNDVTKAGHTLELLEPLVKFQVGLKKLNLHEEEHVLLMAICLLSPDRPGVQDHVRVEALQDKVSEVLQAYIRAHHPGGRLLYAKMIQKLADLRSLNEEHSKQYRSLSFQPEHSMQLTPLVLEVFGGQVT

Atome Classification :

(108 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TFY_A_2(4ITF)
VDR_HUMAN
[Raw transfer]




VHW_A_2(3VHW)
VDR_HUMAN
[Raw transfer]




BIV_C_3(2HCD)
VDRA_DANRE
[Raw transfer]




90L_A_2(5YSY)
VDR_HUMAN
[Raw transfer]




O1C_B_2(2HB7)
VDR_HUMAN
[Raw transfer]




E0E_A_3(6FO9)
VDRA_DANRE
[Raw transfer]




VDA_A_3(2ZL9)
VDR_RAT
[Raw transfer]




91W_A_3(5NKY)
VDRA_DANRE
[Raw transfer]




9CW_A_3(5NMA)
VDRA_DANRE
[Raw transfer]




E05_A_3(6FOD)
VDRA_DANRE
[Raw transfer]




VDX_C_3(2HC4)
VDRA_DANRE
[Raw transfer]




TEY_A_2(4ITE)
VDR_HUMAN
[Raw transfer]




ED9_A_2(3WGP)
VDR_HUMAN
[Raw transfer]




FMV_A_2(3TKC)
?
[Raw transfer]




484_A_3(4G20)
VDRA_DANRE
[Raw transfer]




BIV_A_3(4IA7)
VDRA_DANRE
[Raw transfer]




MVD_B_2(2HB8)
VDR_HUMAN
[Raw transfer]




BIV_A_3(4IA3)
VDRA_DANRE
[Raw transfer]




0VP_A_3(4G1Z)
VDRA_DANRE
[Raw transfer]




OCC_B_2(2HAR)
VDR_HUMAN
[Raw transfer]




FMV_A_2(3OGT)
VDR_HUMAN
[Raw transfer]




BIV_X_3(4RUO)
VDRA_DANRE
[Raw transfer]




0VK_A_3(4G1D)
VDRA_DANRE
[Raw transfer]




LX3_A_3(6FO7)
VDRA_DANRE
[Raw transfer]




DZW_A_3(6FOB)
VDRA_DANRE
[Raw transfer]




90O_A_2(5YT2)
VDR_HUMAN
[Raw transfer]




0S4_A_3(4FHI)
VDRA_DANRE
[Raw transfer]




C33_B_2(2HAM)
VDR_HUMAN
[Raw transfer]




EB1_B_2(1S0Z)
VDR_HUMAN
[Raw transfer]




BIV_A_3(4IA2)
VDRA_DANRE
[Raw transfer]




C3O_B_2(2HAS)
VDR_HUMAN
[Raw transfer]




8J0_A_3(5XZF)
VDR_RAT
[Raw transfer]




DS6_A_2(3AZ3)
VDR_HUMAN
[Raw transfer]




0VP_A_3(4G21)
VDRA_DANRE
[Raw transfer]




BIV_A_3(4IA1)
VDRA_DANRE
[Raw transfer]




VDX_B_2(1DB1)
VDR_HUMAN
[Raw transfer]




VDP_A_5(5GIE)
VDR_RAT
[Raw transfer]




2KB_A_2(5GT4)
VDR_HUMAN
[Raw transfer]




XE4_C_3(2HBH)
VDRA_DANRE
[Raw transfer]




VD5_A_3(2O4R)
VDR_RAT
[Raw transfer]




VDX_A_3(4RUJ)
VDRA_DANRE
[Raw transfer]




0VO_A_3(4G1Y)
VDRA_DANRE
[Raw transfer]




VDB_A_3(2ZLA)
VDR_RAT
[Raw transfer]




BIV_A_3(4IA2)
VDRA_DANRE
[Raw transfer]




CA9_A_2(3AUR)
VDR_HUMAN
[Raw transfer]




90L_A_2(5YSY)
VDR_HUMAN
[Raw transfer]




VDX_A_2(3M7R)
VDR_HUMAN
[Raw transfer]




0CO_A_2(3CS6)
VDR_HUMAN
[Raw transfer]




VDX_C_3(1RK3)
VDR_RAT
[Raw transfer]




VDP_A_3(5GID)
VDR_RAT
[Raw transfer]




2MV_X_2(3A3Z)
VDR_HUMAN
[Raw transfer]




MC9_B_2(1S19)
VDR_HUMAN
[Raw transfer]




VDZ_A_3(1RJK)
VDR_RAT
[Raw transfer]




8VM_A_2(5V39)
VDR_HUMAN
[Raw transfer]




TX5_B_2(1TXI)
VDR_HUMAN
[Raw transfer]




KH1_B_2(1IE8)
VDR_HUMAN
[Raw transfer]




0VQ_A_3(4G2H)
VDRA_DANRE
[Raw transfer]




MCZ_A_2(3B0T)
VDR_HUMAN
[Raw transfer]




CA9_A_2(3AUQ)
VDR_HUMAN
[Raw transfer]




H97_A_3(4RUP)
VDRA_DANRE
[Raw transfer]




VD4_A_3(2O4J)
VDR_RAT
[Raw transfer]




VDX_B_2(1IE9)
VDR_HUMAN
[Raw transfer]




ZYD_A_2(3P8X)
VDR_HUMAN
[Raw transfer]




COV_A_2(3CS4)
VDR_HUMAN
[Raw transfer]




41W_A_2(3X36)
VDR_HUMAN
[Raw transfer]




YS5_A_3(3VRW)
VDR_RAT
[Raw transfer]




YSD_A_3(3VRV)
VDR_RAT
[Raw transfer]




YSV_A_3(5B41)
VDR_RAT
[Raw transfer]




G72_A_3(3O1D)
VDRA_DANRE
[Raw transfer]




41V_A_2(3X31)
VDR_HUMAN
[Raw transfer]




8FF_A_3(5XUQ)
VDR_RAT
[Raw transfer]




23R_X_2(3A40)
VDR_HUMAN
[Raw transfer]




0U3_A_3(4FHH)
VDRA_DANRE
[Raw transfer]




VDP_A_3(5GID)
VDR_RAT
[Raw transfer]




8J3_A_3(5XZH)
VDR_RAT
[Raw transfer]




TEJ_A_2(3A2I)
VDR_HUMAN
[Raw transfer]




H97_A_3(3O1E)
VDRA_DANRE
[Raw transfer]




DS2_A_2(3AZ1)
VDR_HUMAN
[Raw transfer]




AYK_A_3(5OW7)
VDRA_DANRE
[Raw transfer]




DS3_A_2(3AZ2)
VDR_HUMAN
[Raw transfer]




ZNE_A_2(3KPZ)
VDR_HUMAN
[Raw transfer]




VDP_D_6(5GIE)
VDR_RAT
[Raw transfer]




YW2_A_3(4YNK)
VDR_RAT
[Raw transfer]




3EV_A_2(3A78)
VDR_HUMAN
[Raw transfer]




TEJ_A_3(3A2H)
VDR_RAT
[Raw transfer]




3AJ_A_2(3WWR)
VDR_HUMAN
[Raw transfer]




EIM_A_2(3AX8)
VDR_HUMAN
[Raw transfer]




6VH_A_3(5LGA)
VDRA_DANRE
[Raw transfer]




YS3_A_3(3VRU)
VDR_RAT
[Raw transfer]




VD4_A_3(2O4J)
VDR_RAT
[Raw transfer]




C5D_A_4(3DR1)
VDRA_DANRE
[Raw transfer]




MCZ_A_2(3B0T)
VDR_HUMAN
[Raw transfer]




TEJ_A_2(3A2J)
VDR_HUMAN
[Raw transfer]




DLC_A_3(5GIC)
VDR_RAT
[Raw transfer]




8C0_A_3(5XPM)
VDR_RAT
[Raw transfer]




6DS_A_2(3W0C)
VDR_HUMAN
[Raw transfer]




0VQ_A_2(4G2I)
VDR_HUMAN
[Raw transfer]




B0B_A_3(5OWD)
VDRA_DANRE
[Raw transfer]




AYT_A_3(5OW9)
VDRA_DANRE
[Raw transfer]




DS4_A_2(3W0Y)
VDR_HUMAN
[Raw transfer]




DS5_A_2(3W0A)
VDR_HUMAN
[Raw transfer]




4OA_C_3(4Q0A)
VDRA_DANRE
[Raw transfer]




4OA_C_3(4Q0A)
VDRA_DANRE
[Raw transfer]




M7E_A_3(5E7V)
VDRA_DANRE
[Raw transfer]




9KR_A_3(5ZWF)
VDR_RAT
[Raw transfer]




9KX_A_3(5ZWH)
VDR_RAT
[Raw transfer]




10S_A_3(3VJS)
VDR_RAT
[Raw transfer]




10R_A_3(3VJT)
VDR_RAT
[Raw transfer]




14 PsiBlast_PDB 83.4688%-136 - C6 -5LGA 12.8 VDRA_DANRE
21 Blastp_CBE 83.1088%-129 - C6 -5OWD 10.3 VDRA_DANRE
27 Blastp_CBE 82.7088%-130 - C6 -3O1E 12.4 VDRA_DANRE
106 HHSearch 81.9888%-128 * C6 *4Q0A 7.6 VDRA_DANRE
107 HHSearch 81.5088%-130 - C6 -4IA2 12.4 VDRA_DANRE
23 Blastp_CBE 78.8688% -36 - C6 -5OW7 10.0 VDRA_DANRE
22 Blastp_CBE 78.7588% -37 - C6 -5OW9 10.3 VDRA_DANRE
33 Blastp_CBE 78.1688% -37 - C6 -4RUO 12.1 VDRA_DANRE
52 Blastp_CBE 78.1062%-112 - C6 -2HAR 12.5 VDR_HUMAN
19 PsiBlast_PDB 78.1088% -37 - C6 -6FOD 11.2 VDRA_DANRE
18 PsiBlast_PDB 78.0088% -33 - C6 -6FOB 12.3 VDRA_DANRE
1 PsiBlast_PDB 77.9388% -33 - C6 -4FHH 10.0 VDRA_DANRE
28 Blastp_CBE 77.7188% -29 - C6 -3O1D 12.6 VDRA_DANRE
26 Blastp_CBE 77.7088% -32 - C6 -4Q0A 7.6 VDRA_DANRE
24 Blastp_CBE 77.7088% -27 - C6 -5NMA 10.9 VDRA_DANRE
10 PsiBlast_PDB 77.7088% -34 - C6 -4IA2 12.4 VDRA_DANRE
5 PsiBlast_PDB 77.6988% -39 - C6 -4G1Z 11.6 VDRA_DANRE
32 Blastp_CBE 77.6388% -35 - C6 -4RUP 12.8 VDRA_DANRE
29 Blastp_CBE 77.6288% -33 - C6 -3DR1 10.8 VDRA_DANRE
6 PsiBlast_PDB 77.5988% -42 - C6 -4G20 11.2 VDRA_DANRE
4 PsiBlast_PDB 77.5288% -38 - C6 -4G1Y 9.9 VDRA_DANRE
17 PsiBlast_PDB 77.5188% -33 - C6 -6FO9 10.8 VDRA_DANRE
13 PsiBlast_PDB 77.5188% -31 - C6 -5E7V 11.5 VDRA_DANRE
15 PsiBlast_PDB 77.4888% -34 - C6 -6FO7 11.6 VDRA_DANRE
11 PsiBlast_PDB 77.3888% -29 - C6 -4IA3 12.4 VDRA_DANRE
9 PsiBlast_PDB 77.3688% -32 - C6 -4IA1 12.3 VDRA_DANRE
31 Blastp_CBE 77.3588% -34 - C6 -2HC4 10.9 VDRA_DANRE
34 Blastp_CBE 77.3188% -29 - C6 -4RUJ 10.8 VDRA_DANRE
25 Blastp_CBE 77.2488% -34 - C6 -5NKY 11.2 VDRA_DANRE
30 Blastp_CBE 77.1488% -35 - C6 -2HCD 12.6 VDRA_DANRE
98 Blastp_CBE 77.0263% -81 - C6 -5GT4 11.8 VDR_HUMAN
12 PsiBlast_PDB 76.9888% -32 - C6 -4IA7 12.4 VDRA_DANRE
38 Blastp_CBE 76.9462% -89 - C6 -3X31 10.4 VDR_HUMAN
88 Blastp_CBE 76.9264% -82 - C6 -3B0T 11.1 VDR_HUMAN
81 Blastp_CBE 76.8762% -78 - C6 -3TKC 11.7 ?
82 Blastp_CBE 76.8662% -77 - C6 -3OGT 11.6 VDR_HUMAN
97 Blastp_CBE 76.8263% -78 - C6 -5YSY 11.9 VDR_HUMAN
51 Blastp_CBE 76.7962% -83 - C6 -2HAS 12.1 VDR_HUMAN
39 Blastp_CBE 76.7462% -85 - C6 -3WWR 12.0 VDR_HUMAN
47 Blastp_CBE 76.7162% -78 - C6 -3A40 11.8 VDR_HUMAN
91 Blastp_CBE 76.7064% -81 - C6 -3W0C 12.8 VDR_HUMAN
3 PsiBlast_PDB 76.6788% -35 - C6 -4G1D 10.8 VDRA_DANRE
2 PsiBlast_PDB 76.6688% -40 - C6 -4FHI 10.3 VDRA_DANRE
96 Blastp_CBE 76.6463% -79 - C6 -5YT2 11.9 VDR_HUMAN
48 Blastp_CBE 76.6262% -81 - C6 -3A3Z 11.8 VDR_HUMAN
37 Blastp_CBE 76.5762% -82 - C6 -3X36 10.7 VDR_HUMAN
8 PsiBlast_PDB 76.5488% -33 - C6 -4G2H 11.6 VDRA_DANRE
84 Blastp_CBE 76.5362% -78 - C6 -1IE9 11.2 VDR_HUMAN
89 Blastp_CBE 76.5064% -81 - C6 -3WGP 12.1 VDR_HUMAN
7 PsiBlast_PDB 76.5088% -33 - C6 -4G21 10.7 VDRA_DANRE
95 Blastp_CBE 76.4964% -84 - C6 -3AZ1 10.0 VDR_HUMAN
43 Blastp_CBE 76.4862% -85 - C6 -3AX8 11.2 VDR_HUMAN
90 Blastp_CBE 76.4564% -82 - C6 -3W0Y 13.5 VDR_HUMAN
53 Blastp_CBE 76.4462% -82 - C6 -2HAM 12.2 VDR_HUMAN
50 Blastp_CBE 76.4362% -81 - C6 -2HB7 12.4 VDR_HUMAN
103 Blastp_CBE 76.4062% -88 - C6 -5V39 11.5 VDR_HUMAN
79 Blastp_CBE 76.3463% -87 - C6 -5GIE 12.6 VDR_RAT
56 Blastp_CBE 76.3462% -83 - C6 -1S0Z 11.4 VDR_HUMAN
41 Blastp_CBE 76.3262% -80 - C6 -3CS6 11.4 VDR_HUMAN
20 PsiBlast_PDB 76.2788% -29 - C6 -2HBH 10.7 VDRA_DANRE
80 Blastp_CBE 76.2062% -84 - C6 -4G2I 11.8 VDR_HUMAN
36 Blastp_CBE 76.1562% -85 - C6 -4ITE 12.9 VDR_HUMAN
92 Blastp_CBE 76.1164% -84 - C6 -3W0A 12.5 VDR_HUMAN
94 Blastp_CBE 76.1064% -81 - C6 -3AZ2 11.3 VDR_HUMAN
46 Blastp_CBE 76.1062% -79 - C6 -3A78 10.9 VDR_HUMAN
54 Blastp_CBE 76.0962% -83 - C6 -1TXI 10.4 VDR_HUMAN
49 Blastp_CBE 76.0862% -81 - C6 -2HB8 11.5 VDR_HUMAN
93 Blastp_CBE 76.0664% -83 - C6 -3AZ3 12.6 VDR_HUMAN
55 Blastp_CBE 76.0262% -84 - C6 -1S19 10.8 VDR_HUMAN
86 Blastp_CBE 76.0162% -85 - C6 -1DB1 10.9 VDR_HUMAN
77 Blastp_CBE 75.9062% -82 - C6 -3P8X 11.4 VDR_HUMAN
35 Blastp_CBE 75.7762% -86 - C6 -4ITF 13.3 VDR_HUMAN
85 Blastp_CBE 75.6962% -80 - C6 -1IE8 11.2 VDR_HUMAN
83 Blastp_CBE 75.6562% -83 - C6 -3KPZ 11.0 VDR_HUMAN
99 Blastp_CBE 75.6361% -79 - C6 -3A2J 10.5 VDR_HUMAN
42 Blastp_CBE 75.6262% -80 - C6 -3CS4 11.6 VDR_HUMAN
44 Blastp_CBE 75.5762% -84 - C6 -3AUR 11.1 VDR_HUMAN
40 Blastp_CBE 75.5362% -77 - C6 -3VHW 13.1 VDR_HUMAN
45 Blastp_CBE 75.1062% -81 - C6 -3AUQ 11.2 VDR_HUMAN
101 Blastp_CBE 75.0763% -78 - C6 -3M7R 9.7 VDR_HUMAN
87 Blastp_CBE 74.9662% -84 - C6 -3A2I 10.6 VDR_HUMAN
64 Blastp_CBE 74.5862% -90 - C6 -5XZH 12.0 VDR_RAT
102 Blastp_CBE 74.3464% -91 - C6 -5GID 11.8 VDR_RAT
76 Blastp_CBE 74.3162% -90 - C6 -2ZL9 11.9 VDR_RAT
100 Blastp_CBE 74.0564% -92 - C6 -5GIC 10.6 VDR_RAT
73 Blastp_CBE 74.0562% -88 - C6 -3VJT 8.7 VDR_RAT
75 Blastp_CBE 74.0362% -83 - C6 -2ZLA 12.0 VDR_RAT
66 Blastp_CBE 73.9262% -93 - C6 -5XUQ 12.1 VDR_RAT
62 Blastp_CBE 73.8062% -93 - C6 -5ZWH 7.4 VDR_RAT
74 Blastp_CBE 73.7562% -80 - C6 -3VJS 8.8 VDR_RAT
67 Blastp_CBE 73.7362% -79 - C6 -5XPM 12.4 VDR_RAT
69 Blastp_CBE 73.5962% -81 - C6 -4YNK 11.7 VDR_RAT
59 Blastp_CBE 73.4962% -88 - C6 -1RK3 11.3 VDR_RAT
60 Blastp_CBE 73.4362% -81 - C6 -1RJK 11.5 VDR_RAT
70 Blastp_CBE 73.4162% -92 - C6 -3VRW 11.9 VDR_RAT
65 Blastp_CBE 73.4162% -86 - C6 -5XZF 12.7 VDR_RAT
61 Blastp_CBE 73.4162% -83 - C6 -3A2H 10.5 VDR_RAT
57 Blastp_CBE 73.2862% -77 - C6 -2O4R 11.2 VDR_RAT
63 Blastp_CBE 73.2662% -81 - C6 -5ZWF 8.6 VDR_RAT
68 Blastp_CBE 73.2362% -85 - C6 -5B41 11.4 VDR_RAT
71 Blastp_CBE 73.1362% -92 - C6 -3VRV 11.4 VDR_RAT
72 Blastp_CBE 73.0862% -90 - C6 -3VRU 10.3 VDR_RAT
58 Blastp_CBE 73.0362% -81 - C6 -2O4J 11.6 VDR_RAT
78 Blastp_CBE 72.1863%-102 - C6 -5GIE 11.2 VDR_RAT
110 HHSearch 69.3281%-108 - C6 -3B0T 10.2 VDR_HUMAN
111 HHSearch 69.2881%-107 - C6 -5YSY 10.5 VDR_HUMAN
112 HHSearch 68.2382%-101 - C6 -5GID 10.9 VDR_RAT
108 HHSearch 67.5381% -87 - C6 -2O4J 10.6 VDR_RAT