@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : AVR2B_HUMAN: (2019-05-18 )
MTAPWVALALLWGSLCAGSGRGEAETRECIYYNANWELERTNQSGLERCEGEQDKRLHCYASWRNSSGTIELVKKGCWLDDFNCYDRQECVATEENPQVYFCCCEGNFCNERFTHLPEAGGPEVTYEPPPTAPTLLTVLAYSLLPIGGLSLIVLLAFWMYRHRKPPYGHVDIHEDPGPPPPSPLVGLKPLQLLEIKARGRFGCVWKAQLMNDFVAVKIFPLQDKQSWQSEREIFSTPGMKHENLLQFIAAEKRGSNLEVELWLITAFHDKGSLTDYLKGNIITWNELCHVAETMSRGLSYLHEDVPWCRGEGHKPSIAHRDFKSKNVLLKSDLTAVLADFGLAVRFEPGKPPGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELVSRCKAADGPVDEYMLPFEEEIGQHPSLEELQEVVVHKKMRPTIKDHWLKHPGLAQLCVTIEECWDHDAEARLSAGCVEERVSLIRRSVNGTTSDCLVSLVTSVTNVDLPPKESSI

Atome Classification :

(9 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_B_24(3Q4T)
AVR2A_HUMAN
[Raw transfer]




GVD_B_10(3SOC)
AVR2A_HUMAN
[Raw transfer]




GVD_B_10(3SOC)
AVR2A_HUMAN
[Raw transfer]




GVD_A_3(3SOC)
AVR2A_HUMAN
[Raw transfer]




TAK_A_3(3Q4T)
AVR2A_HUMAN
[Raw transfer]




TAK_B_17(3Q4T)
AVR2A_HUMAN
[Raw transfer]




6OJ_A_3(4ASX)
AVR2A_HUMAN
[Raw transfer]




6OJ_A_3(4ASX)
AVR2A_HUMAN
[Raw transfer]




6OJ_B_8(4ASX)
AVR2A_HUMAN
[Raw transfer]




ADE_A_4(2QLU)
AVR2B_HUMAN
[Raw transfer]




EDO_B_26(3Q4T)
AVR2A_HUMAN
[Raw transfer]




1 PsiBlast_PDB 98.9098%-107 - C1 -2QLU 3.1 AVR2B_HUMAN
52 HHSearch 91.7876%-106 - C1 -4ASX 5.7 AVR2A_HUMAN
51 HHSearch 90.6076%-107 - C1 -3SOC 7.6 AVR2A_HUMAN
4 PsiBlast_PDB 90.4877%-106 - C1 -4ASX 5.7 AVR2A_HUMAN
21 Blastp_CBE 89.8378%-100 - C1 -4ASX 5.7 AVR2A_HUMAN
22 Blastp_CBE 89.5478%-106 - C1 -3SOC 7.6 AVR2A_HUMAN
3 PsiBlast_PDB 89.0077%-100 - C1 -3SOC 6.9 AVR2A_HUMAN
2 PsiBlast_PDB 88.7577% -99 - C1 -3Q4T 7.6 AVR2A_HUMAN
23 Blastp_CBE 88.4878%-105 - C1 -3Q4T 7.0 AVR2A_HUMAN