@TOME V3
(Feb 2022)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : CDK13_HUMAN: (2019-05-18 )
MPSSSDTALGGGGGLSWAEKKLEERRKRRRFLSPQQPPLLLPLLQPQLLQPPPPPPPLLFLAAPGTAAAAAAAAAASSSCFSPGPPLEVKRLARGKRRAGGRQKRRRGPRAGQEAEKRRVFSLPQPQQDGGGGASSGGGVTPLVEYEDVSSQSEQGLLLGGASAATAATAAGGTGGSGGSPASSSGTQRRGEGSERRPRRDRRSSSGRSKERHREHRRRDGQRGGSEASKSRSRHSHSGEERAEVAKSGSSSSSGGRRKSASATSSSSSSRKDRDSKAHRSRTKSSKEPPSAYKEPPKAYREDKTEPKAYRRRRSLSPLGGRDDSPVSHRASQSLRSRKSPSPAGGGSSPYSRRLPRSPSPYSRRRSPSYSRHSSYERGGDVSPSPYSSSSWRRSRSPYSPVLRRSGKSRSRSPYSSRHSRSRSRHRLSRSRSRHSSISPSTLTLKSSLAAELNKNKKARAAEAARAAEAAKAAEATKAAEAAAKAAKASNTSTPTKGNTETSASASQTNHVKDVKKIKIEHAPSPSSGGTLKNDKAKTKPPLQVTKVENNLIVDKATKKAVIVGKESKSAATKEESVSLKEKTKPLTPSIGAKEKEQHVALVTSTLPPLPLPPMLPEDKEADSLRGNISVKAVKKEVEKKLRCLLADLPLPPELPGGDDLSKSPEEKKTATQLHSKRRPKICGPRYGETKEKDIDWGKRCVDKFDIIGIIGEGTYGQVYKARDKDTGEMVALKKVRLDNEKEGFPITAIREIKILRQLTHQSIINMKEIVTDKEDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFNENHIKSFMRQLMEGLDYCHKKNFLHRDIKCSNILLNNRGQIKLADFGLARLYSSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRICGSPCPAVWPDVIKLPYFNTMKPKKQYRRKLREEFVFIPAAALDLFDYMLALDPSKRCTAEQALQCEFLRDVEPSKMPPPDLPLWQDCHELWSKKRRRQKQMGMTDDVSTIKAPRKDLSLGLDDSRTNTPQGVLPSSQLKSQGSSNVAPVKTGPGQHLNHSELAILLNLLQSKTSVNMADFVQVLNIKVNSETQQQLNKINLPAGILATGEKQTDPSTPQQESSKPLGGIQPSSQTIQPKVETDAAQAAVQSAFAVLLTQLIKAQQSKQKDVLLEERENGSGHEASLQLRPPPEPSTPVSGQDDLIQHQDMRILELTPEPDRPRILPPDQRPPEPPEPPPVTEEDLDYRTENQHVPTTSSSLTDPHAGVKAALLQLLAQHQPQDDPKREGGIDYQAGDTYVSTSDYKDNFGSSSFSSAPYVSNDGLGSSSAPPLERRSFIGNSDIQSLDNYSTASSHSGGPPQPSAFSESFPSSVAGYGDIYLNAGPMLFSGDKDHRFEYSHGPIAVLANSSDPSTGPESTHPLPAKMHNYNYGGNLQENPSGPSLMHGQTWTSPAQGPGYSQGYRGHISTSTGRGRGRGLPY

Atome Classification :

(12 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_5(4NST)
CDK12_HUMAN
[Raw transfer]



ADP_A_5(5EFQ)
CDK13_HUMAN
[Raw transfer]



ADP_C_9(5EFQ)

[Raw transfer]



ADP_C_12(4NST)

[Raw transfer]



ADP_C_9(5EFQ)

[Raw transfer]



CJM_A_6(6B3E)
CDK12_HUMAN
[Raw transfer]



ANP_A_5(4CXA)
CDK12_HUMAN
[Raw transfer]



CJM_C_11(6B3E)

[Raw transfer]



5I1_C_5(5ACB)
CDK12_HUMAN
[Raw transfer]



8M1_C_9(6CKX)

[Raw transfer]



5I1_D_6(5ACB)

[Raw transfer]



8M1_A_6(6CKX)
CDK12_HUMAN
[Raw transfer]
26 HHSearch 95.91100%-113 - C1 -5EFQ 6.5
21 Blastp_CBE 95.5699%-113 - C1 -5EFQ 6.5
4 PsiBlast_PDB 94.6391%-113 - C1 -4CXA 6.5 CDK12_HUMAN
1 PsiBlast_PDB 94.5299%-116 - C1 -5EFQ 6.4 CDK13_HUMAN
5 PsiBlast_PDB 92.9991%-118 - C1 -5ACB 8.2 CDK12_HUMAN
24 Blastp_CBE 91.9191%-119 - C1 -5ACB 6.8
2 PsiBlast_PDB 91.6190%-112 - C1 -4NST 6.2 CDK12_HUMAN
7 PsiBlast_PDB 91.2590%-119 - C1 -6B3E 8.6 CDK12_HUMAN
23 Blastp_CBE 90.5790%-121 - C1 -4NST 6.1
25 Blastp_CBE 90.4691%-124 - C1 -6B3E 9.1
22 Blastp_CBE 86.3690%-135 - C1 -6CKX 7.6
3 PsiBlast_PDB 86.3190%-135 - C1 -6CKX 7.8 CDK12_HUMAN