@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : CDK4_HUMAN: (2019-05-19 )
MATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYLHKDEGNPE

Atome Classification :

(8 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LQQ_B_5(2EUF)
CDK6_HUMAN
[Raw transfer]




24V_B_3(4TTH)
CDK6_HUMAN
[Raw transfer]




3NV_A_2(3NUX)
CDK6_HUMAN
[Raw transfer]




0RS_A_2(4EZ5)
CDK6_HUMAN
[Raw transfer]




FSE_C_3(1XO2)
CDK6_HUMAN
[Raw transfer]




AP9_B_4(2F2C)
CDK6_HUMAN
[Raw transfer]




6ZV_A_2(5L2S)
CDK6_HUMAN
[Raw transfer]




4AU_A_2(4AUA)
CDK6_HUMAN
[Raw transfer]




12 PsiBlast_PDB 73.8569% -46 - C1 -2EUF 8.2 CDK6_HUMAN
11 PsiBlast_PDB 73.4469% -36 - C1 -1XO2 5.7 CDK6_HUMAN
13 PsiBlast_PDB 72.5369% -42 - C1 -2F2C 6.0 CDK6_HUMAN
21 Blastp_CBE 65.8771% -39 - C1 -5L2S 9.0 CDK6_HUMAN
22 Blastp_CBE 65.7971% -39 - C1 -4EZ5 8.0 CDK6_HUMAN
19 PsiBlast_PDB 65.3070% -39 - C1 -3NUX 7.3 CDK6_HUMAN
20 PsiBlast_PDB 63.7270% -31 - C1 -4AUA 4.9 CDK6_HUMAN
18 PsiBlast_PDB 59.8869% -62 - C1 -4TTH 7.2 CDK6_HUMAN