@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : CDK5_HUMAN: (2019-05-19 )
MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSDFCPP

Atome Classification :

(10 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

3O0_B_5(3O0G)
CDK5_HUMAN
[Raw transfer]




RRC_A_5(1UNL)
CDK5_HUMAN
[Raw transfer]




RRC_A_5(1UNL)
CDK5_HUMAN
[Raw transfer]




ALH_A_5(1UNG)
CDK5_HUMAN
[Raw transfer]




PVB_A_3(1V0P)
CDC2H_PLAFK
[Raw transfer]




INR_A_3(1V0O)
CDC2H_PLAFK
[Raw transfer]




HJK_A_2(6Q4G)
?
[Raw transfer]




Z3R_B_10(4AU8)
CDK5_HUMAN
[Raw transfer]




Z3R_B_10(4AU8)
CDK5_HUMAN
[Raw transfer]




Z3R_A_6(4AU8)
CDK5_HUMAN
[Raw transfer]




25 HHSearch 95.36100%-105 - C1 -1UNL 7.2 CDK5_HUMAN
3 PsiBlast_PDB 95.1399%-105 - C1 -1UNL 7.2 CDK5_HUMAN
1 PsiBlast_PDB 93.5099%-111 - C1 -1UNG 5.2 CDK5_HUMAN
24 HHSearch 91.10100%-106 - C1 -4AU8 5.0 CDK5_HUMAN
23 Blastp_CBE 91.10100%-106 - C1 -4AU8 5.0 CDK5_HUMAN
6 PsiBlast_PDB 89.77100%-102 - C1 -4AU8 4.9 CDK5_HUMAN
21 Blastp_CBE 86.7799%-121 - C1 -3O0G 6.5 CDK5_HUMAN
10 PsiBlast_PDB 84.3160%-123 - C1 -1V0P 8.2 CDC2H_PLAFK
7 PsiBlast_PDB 79.6060%-118 - C1 -1V0O 6.1 CDC2H_PLAFK
11 PsiBlast_PDB 74.3260% -38 - C1 -6Q4G 4.8 ?