@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : CDK8_HUMAN: (2019-05-19 )
MDYDFKVKLSSERERVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPLPTSDVFAGCQIPYPKREFLTEEEPDDKGDKKNQQQQQGNNHTNGTGHPGNQDSSHTQGPPLKKVRVVPPTTTSGGLIMTSDYQRSNPHAAYPNPGPSTSQPQSSMGYSATSQQPPQYSHQTHRY

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5Y6_A_3(5HBE)
CDK8_HUMAN
[Raw transfer]




5Y8_A_3(5HBJ)
CDK8_HUMAN
[Raw transfer]




4TV_A_3(5BNJ)
CDK8_HUMAN
[Raw transfer]




5XG_A_3(5FGK)
CDK8_HUMAN
[Raw transfer]




50R_A_10(5CEI)
CDK8_HUMAN
[Raw transfer]




66X_A_3(5HVY)
CDK8_HUMAN
[Raw transfer]




62M_A_3(5HNB)
CDK8_HUMAN
[Raw transfer]




68U_A_3(5I5Z)
CDK8_HUMAN
[Raw transfer]




8D6_A_4(5XS2)
CDK8_HUMAN
[Raw transfer]




0SW_A_3(4F7S)
CDK8_HUMAN
[Raw transfer]




8D6_A_4(5XS2)
CDK8_HUMAN
[Raw transfer]




6A6_A_3(5IDP)
CDK8_HUMAN
[Raw transfer]




C1I_A_3(4CRL)
CDK8_HUMAN
[Raw transfer]




0SS_A_3(4F6W)
CDK8_HUMAN
[Raw transfer]




8CC_A_4(5XQX)
CDK8_HUMAN
[Raw transfer]




69Z_A_3(5ICP)
CDK8_HUMAN
[Raw transfer]




6A7_A_3(5IDN)
CDK8_HUMAN
[Raw transfer]




FMT_A_8(4F6S)
CDK8_HUMAN
[Raw transfer]




0SR_A_3(4F6U)
CDK8_HUMAN
[Raw transfer]




0SO_A_3(4F7L)
CDK8_HUMAN
[Raw transfer]




0SU_A_3(4F7J)
CDK8_HUMAN
[Raw transfer]




0SV_A_3(4F7N)
CDK8_HUMAN
[Raw transfer]




0ST_A_3(4F70)
CDK8_HUMAN
[Raw transfer]




EDO_A_7(3RGF)
CDK8_HUMAN
[Raw transfer]




25 HHSearch 96.97100%-112 - C2 -5XS2 5.5 CDK8_HUMAN
16 PsiBlast_PDB 96.97100%-112 - C2 -5XS2 5.5 CDK8_HUMAN
20 PsiBlast_PDB 93.4199%-120 - C2 -5HNB 6.7 CDK8_HUMAN
17 PsiBlast_PDB 92.91100%-125 - C2 -5IDN 7.9 CDK8_HUMAN
18 PsiBlast_PDB 92.87100%-117 - C2 -5IDP 6.0 CDK8_HUMAN
13 PsiBlast_PDB 92.54100%-115 - C2 -5CEI 5.9 CDK8_HUMAN
15 PsiBlast_PDB 92.38100%-123 - C2 -5XQX 5.0 CDK8_HUMAN
22 Blastp_CBE 92.30100%-126 - C2 -5HBJ 6.5 CDK8_HUMAN
21 Blastp_CBE 92.19100%-118 - C2 -5ICP 6.8 CDK8_HUMAN
12 PsiBlast_PDB 92.12100%-124 - C2 -4CRL 8.3 CDK8_HUMAN
19 PsiBlast_PDB 91.5299%-115 - C2 -5I5Z 6.6 CDK8_HUMAN
24 Blastp_CBE 91.32100%-135 - C2 -5FGK 6.9 CDK8_HUMAN
23 Blastp_CBE 91.23100%-117 - C2 -5HBE 6.4 CDK8_HUMAN
9 PsiBlast_PDB 91.23100%-119 - C2 -4F7S 5.4 CDK8_HUMAN
4 PsiBlast_PDB 90.76100%-118 - C2 -4F6W 12.0 CDK8_HUMAN
8 PsiBlast_PDB 90.75100%-125 - C2 -4F7N 8.3 CDK8_HUMAN
2 PsiBlast_PDB 90.71100%-123 - C2 -4F6S 2.9 CDK8_HUMAN
10 PsiBlast_PDB 90.57100%-114 - C2 -5BNJ 7.1 CDK8_HUMAN
14 PsiBlast_PDB 90.14100%-128 - C2 -5HVY 9.4 CDK8_HUMAN
3 PsiBlast_PDB 90.14100%-118 - C2 -4F6U 9.5 CDK8_HUMAN
5 PsiBlast_PDB 89.60100%-126 - C2 -4F70 7.2 CDK8_HUMAN
6 PsiBlast_PDB 89.29100%-123 - C2 -4F7J 7.4 CDK8_HUMAN
7 PsiBlast_PDB 88.98100%-120 - C2 -4F7L 8.5 CDK8_HUMAN
1 PsiBlast_PDB 88.07100%-135 - C2 -3RGF 2.9 CDK8_HUMAN