@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : CDK9_HUMAN: (2019-05-19 )
MAKQYDSVECPFCDEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRKGSQITQQSTNQSRNPATTNQTEFERVF

Atome Classification :

(9 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_4(3BLQ)
CDK9_HUMAN
[Raw transfer]




ANP_A_4(3MIA)
CDK9_HUMAN
[Raw transfer]




T3C_A_3(4BCG)
CDK9_HUMAN
[Raw transfer]




F18_A_3(3TNH)
CDK9_HUMAN
[Raw transfer]




T9N_A_3(4BCJ)
CDK9_HUMAN
[Raw transfer]




T3E_A_3(4BCI)
CDK9_HUMAN
[Raw transfer]




SLQ_A_3(3LQ5)
CDK9_HUMAN
[Raw transfer]




CPB_A_6(3BLR)
CDK9_HUMAN
[Raw transfer]




RFZ_A_5(3MY1)
CDK9_HUMAN
[Raw transfer]




17 PsiBlast_PDB 95.8199%-137 - C1 -4BCG 6.8 CDK9_HUMAN
4 PsiBlast_PDB 94.8499%-129 - C1 -3MIA 4.8 CDK9_HUMAN
11 PsiBlast_PDB 92.4599%-127 - C1 -3MY1 5.1 CDK9_HUMAN
15 PsiBlast_PDB 91.5099%-132 - C1 -4BCI 6.6 CDK9_HUMAN
12 PsiBlast_PDB 91.0699%-133 - C1 -3LQ5 7.7 CDK9_HUMAN
9 PsiBlast_PDB 91.0199%-143 - C1 -3BLQ 5.0 CDK9_HUMAN
16 PsiBlast_PDB 90.9399%-127 - C1 -4BCJ 6.4 CDK9_HUMAN
10 PsiBlast_PDB 90.0299%-133 - C1 -3BLR 7.8 CDK9_HUMAN
13 PsiBlast_PDB 87.6999%-142 - C1 -3TNH 5.2 CDK9_HUMAN