@TOME V2.2
(Nov 2016)

Ref. - Doc.
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3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
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Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : S29A4_HUMAN: (2015-12-10 )
MGSVGSQRLEEPSVAGTPDPGVVMSFTFDSHQLEEAAEAAQGQGLRARGVPAFTDTTLDEPVPDDRYHAIYFAMLLAGVGFLLPYNSFITDVDYLHHKYPGTSIVFDMSLTYILVALAAVLLNNVLVERLTLHTRITAGYLLALGPLLFISICDVWLQLFSRDQAYAINLAAVGTVAFGCTVQQSSFYGYTGMLPKRYTQGVMTGESTAGVMISLSRILTKLLLPDERASTLIFFLVSVALELLCFLLHLLVRRSRFVLFYTTRPRDSHRGRPGLGRGYGYRVHHDVVAGDVHFEHPAPALAPNESPKDSPAHEVTGSGGAYMRFDVPRPRVQRSWPTFRALLLHRYVVARVIWADMLSIAVTYFITLCLFPGLESEIRHCILGEWLPILIMAVFNLSDFVGKILAALPVDWRGTHLLACSCLRVVFIPLFILCVYPSGMPALRHPAWPCIFSLLMGISNGYFGSVPMILAAGKVSPKQRELAGNTMTVSYMSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILAGL

Atome Classification :

(20 SA) .........10........20........30........40.......-----.50......--..60........70..-----......-----------80........90.-.......100..-.....110.......120....-------...130.........140.......150.......160.......170.-......180...--....--------190---------..-..------.----..200.......210....-------...220------------........230-----.......240-------.......------------.250.......260.....-----------..270.......280.......290---------......----..300.......310.-------------......320.......330----....--.--....340....----...350-------....--....360.....---..370.....-------..380..---------......390....---------...400...---....410....-------------------------.-..-.420-.-------.....--.430.......------440.........450.-------------......460.......470-.......480.-----------......490.......500....---------...510..----.....520.......530----------------------------
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) MGSVGSQRLEEPSVAGTPDPGVVMSFTFDSHQLEEAAEAAQGQGLRAR-----GVPAFTDTT--LDEPVPDDRYHAIYFA-----MLLAGV-----------GFLLPYNSFITDV-DYLHHKYPGTSI-VFDMSLTYILVALAAVLLNNVL-------VERL--TLHTRITAGYLLALGPLLFISICDVWLQLFSRDQAYAINLAAV-GTVAFGCTVQQS--SFYG--------YTG---------ML-PK------R----YTQGVMTGESTAGVMISLS-------RILTK-------------LLLPDERASTL-----IFFLVSVAL--------ELLCFLL------------HLLVRRSRFVLFYTTRPRD-----------SHRGRPGLGRGYGYRVHHDVVAGD----------VHFEHP----APALAPNESPKDSPAH-------------EVTGSGGAYMRFDVPRP------RVQR--S--WPTFRALLLHR----YVVAR--------VIWA--DMLSIAVTYFIT---LCLFPGLESE-------IRHC-IL---------GEWLPILIMAVFN---------LSDFVGKIL---AALPVD-WRGT-------------------------H-LL-ACSC-L-------RVVFI--PLFILCVYPSG------M--PALRHPAWPCIFS-------------LLMGISNGYFGSVPMILAA-GKVSPKQRELA-----------GNTMTVSYMSGLTLGSAVAYCTY---------SLTRDAHG----SCLHASTANGSILAGL------------------------------
20 Fugue 90.4315% -95 - C3 -2P4E - PCSK9_HUMAN A:[153-682] SIPWNLERITPPRYRAGGSL--VEVYLLDTS-IQSDHREIEGRVMVT---------DFENVP--EEDQASKCDSHGTHLA-----GVVSGR-----------DAGVAKGASMRSL-RVLNCQGKGTVS-GTLIGLEFIRKSQLVQPVGPLV-------V-LL--PLAGGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQPVTLG--------TLGTNFGRCVDLFA-PG------E----DIIGASSDCSTCFVSQSG-----------TS-------------QAAAHVAGIAA-----MMLSAEPEL--------TLAELRQ------------RLIHFSAKDVINEAWFPED-----------QRVLTPNLVAALPPSTHWQLFCRT----------VWSAHS----GPTRMATAIARCAPDE-------------ELLSCSSFSRSGKRRGE------RMEAQGG--KLVCRAHNAFGGEGVYAIAR--------CCL----LPQANCSVHTA---PPAEASMGTR-------VH-C------------------------------------HQQGHVL---TGCSSH-WEVE-------------------------D-LG-PNQC-V-------GHREA--SIHASCCHAPG------LECKVKEHGIPAPQEQ-------------VTVACEEGW------TLTG-CSALPG-------------------------TSHVLG------AY---------AV----DN----TCVVRSRSEEAVTAVAICCRSR------------------------
26 Fugue 87.3317%-102 - C1 -4QFH ? A:[6-615] HHHMKDQYLKDLTVHLNESNAAPANTSMAVASFNMPHEITRR--MRPL-----GVDA--DTS--LTSCPSWRRLQELYEIHGSESILKNFD-----------ECKDRFQRYSLEV-DL--RSSDKNFV-FLDYSKTHINDEIKDVLFKLVEERGIRAFMRAL--FAGEKVNTAENRSVLHIALRNRSNRPIFVNGHDVMPLVNKVLE-QMKKLSEKVRRG--EWKG--------QSG---------K--PI------R----HVVNIGIGGSDLGPMMACEALRPFSDRRISM-------------HFVSNIDGTHL-----SEVLNLVDL--------ESTLFIIASKTFTTQETITNALSARNEFLKFLSSR--------------------GISEAGAVAKHFVALSTN-------------AEK----VKEFGIDEENMFQFWD-------------WV---GGRYSLWSAIGL------SVMI--SIGYDNFVELLTGA----HIMDE--------HFINAPTENNLPIILALV---GIWYNNFFGS-------ETQA-ILPYDQYLWRLPAYLQQLDMESNGKGATKNGRMVSTHTGPIIFGEAGTNGQ-HAFY-------------------------Q-LI-HQG-----------TKLI--PCDFIGAIQTQNYIGEHH--RILMSNFFAQTEA-------------LMIGKTPEEVKRE--LESA-GGKSEDEIQLLIPQKTFTGGRPSNSLLVKALTPRALGAIIAMYEH---------KVLVQGAIWGINSYDQWGVELGKLLAKSILLQLQPGQKVTNHDSSTNGLIELFNERSH
23 Fugue 83.9619%-113 - C2 -4OK4 - ? A:[30-733] ----------HPNLIVTEQDVANIAASWESYDAYAEQLNADKTNLDAFMAEGVVVPMPKDAGGGYTHEQHKRNYKAIRNA-----GFLYQVTGDEKYLTFAKDLLLAYAKMYPSLGEHPNRKEQSPGR-LFWQSLNEAVWLVYSIQGYDAI-------IDGLAAEEKQEIESGVFLPMAKFLSVESPETFNKIHNLGTWAVAAVGMT-GYVLGNDELVEI--SLMGLDKTGKAGFMK---------QL-DKLFSPDGY----YTEGPYYQRYALMPFIWFA-------KAIETNEPERKIFEYRNNILLKAVYTTIDLSYAGYFFPINDALKDKGIDTVELVHALA------------IVYSITGDNTLLDIAQEQGRISLTGDGLKVAKAVGEGLTQPYNYR---SILLGDGADGDQGALSIHRLGEGHNHMALVAKNTSQGMGHGHFDKLNWLLYDNGNEIVTDYGAARYLNVEAKYGGHYLAENN--T--WA--KQTIAHN----TLVVNEQSHFYGDVTTA--DLHHPEVLSFYSGEDYQLSSAKEANAYDGVEFVRSM-LLVNV------PSLEHPIVVDVLN---------VSADKASTF---D-LPLY-FNGQIIDFSFKVKDNKNVMKMLGKRNGYQH-LW-LRNT-APVGDASERATWILDDRFYSYAFVTS------T--PSKKQNVLIAELGANDPNYNLRQQQVLIRRVEKAKQASFVSVLEPHGKYDGSLETTS-----------GAYSNVKSVKHVSENGKDVVVVDLKDGSNVVVALSYNANS----EQVHKVNAGEEAIEWKGFSSVVV-----------------------
11 HHSearch 53.9011%-121 - C3 -3WDO - ? A:[11-155] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATWG--LGTVFSLRMLGM---FMVLPVLTTY-------GMALQGAS--------EALIG-IAIGIYG---------LTQAVFQIP---FGLLSDRIGRK-------------------------PLIV-GGLA-V-------FAAGS-----VIAALS--------------DSIWGIILGR-------------ALQGSGA--IAAAVMALLS-DLTREQNRTKA-----------MAFIGVSFGITFAIAMVLGPIIT---------HKLGLHAL----FWMIAILATTGIALTI------------------------------
8 HHSearch 45.5812% -97 - C3 -3O7Q FUCP_ECOLI A:[47-170] ----------------------------------------------------------------------------------------------------------------ILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGIL-------MKKL--SYKAGIITGLFLYALGAALFWPAA-------EIMNYTLFLVGL-FIIAAGLGCLET--AANP--------FVT---------VLGPE------SSGHFRLNLAQTFNSFGAIIAVVF-------GQSLI-------------LSNVPHQSQDV-----LDKMSPEQL--------SAYKHSL------------VLSVQTPYMIIVAIVLLVA-----------LLIMLTKFPALQSDNHSDAKQGSF----------SASLSR----LARIRHWRWAVLAQFC-------------YVGAQTACWSYLIRYAV------EEIP--G--MTAGFAANYLT----GTMVC--------FFIG--RFTGTWLISRFA---PHKVLAAYAL-------IAMA-LC---------LISAFAGGHVGLI---------ALTLCSAFM---SIQYPT-IFSL-------------------------G-IK-NLGQ-D-------TKYGS--SFIVMTIIGGG------I--VTPVMGFVSDAAG-------------NIPTAELIPALCFAVIFIF-ARFRSQT---------------------------------------------------------------------------------------------------------
15 HHSearch 45.5511% -90 - C3 -3O7Q FUCP_ECOLI A:[65-173] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LIQSAFY---------FGYFIIPIP---AGILMKKLSYK-------------------------A-GI-ITGLFL-------YALGA--ALFWPAAE--------------IMNYTLFLVGL-------------FIIAAGLGCLETAANPFVT-VLGPESSGHFR-----------LNLAQTFNSFGAIIAVVFGQSLI---------LSNVPHQS----QDVLDKMSPEQLSAYK------------------------------
14 HHSearch 40.3013% -86 - C3 -1PW4 - GLPT_ECOLI A:[67-174] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FALSGIS---------IAYGFSKFI---MGSVSDRSNPR-------------------------VFLP-AGLI-L-------AAAVM--LFMGFVPW-------------ATSSIAVMFVLL-------------FLCGWFQGMGWPPCGRTMV-HWWSQKERGGI-----------VSVWNCAHNVGGGIPPLLFLLGM---------AWFNDWHA----ALYMPAFCAILVALFA------------------------------
5 PsiBlast_PDB 39.8030% -33 - C3 -4NV5 VKOR_SYNJB A:[80-112] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FL--GVLALAVLPD-------L--PLVKRWRWPALFG-------------LVSAMTAFEMYMLYLMVAV-LRQFCMYCTTA-----------IILVAGLGLVTVLGHRWLGGKLA---------FSYILVAF----LTLVTTIGVYANQVPP------------------------------
4 PsiBlast_PDB 36.7730% -32 - C3 -4NV2 VKOR_SYNJB A:[80-112] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FL--GVLALAVLPD----------PLVKRWRWPALFG-------------LVSAMTAFEMYMLYLMVAV-LRQFCMYCTTA-----------IILVAGLGLVTVLGHRWLDGGKL---------AFSYILVA----FLTLVTTIGVYANQVP------------------------------
17 Fugue 36.0913% 127 - C3 -2CPG - COPG_STRAG A:[1-43] -------------------MKKRLTITLSESVLENLEKMAREMGLSKS-----AMISVALEN--YKKGQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6 PsiBlast_PDB 35.2630% -33 - C3 -4NV6 VKOR_SYNJB A:[80-112] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FL--GVLALAVLPD-------L--PLVKRWRWPALFG-------------LVSAMTAFEMYMLYLMVAV-LRQFCMYCTTA-----------IILVAGLGLVTVLGHRWLGGKLA---------FSYILVAF----LTLVTTIGVYANQVPP------------------------------
19 Fugue 35.1214% 124 * C3 *1EA4 COPG_STRAG A:[2-43] --------------------KKRLTITLSESVLENLEKMAREMGLSKS-----AMISVALEN--YKKGQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3 PsiBlast_PDB 34.8930% -58 - C3 -3KP9 VKOR_SYNJB A:[80-112] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FL--GVLALAVLP--------L--PLVKRWRWPALFG-------------LVSAMTAFEMYMLYLMVAV-LRQFCMYCTTA-----------IILVAGLGLVTVLGHRWLDGGKL---------AFSYILVA----FLTLVTTIGVYANQVP------------------------------
12 HHSearch 33.7412% -58 - C3 -2GFP - EMRD_ECOLI A:[47-153] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SVMGAYL---------LTYGVSQLF---YGPISDRVGRR-------------------------P-VILVGMS-I-------FMLA-----TLVAVTT--------------SSLTVLIAAS-------------AMQGMGTGVGGVMARTLPR-DLYERTQLRHA-----------NSLLNMGILVSPLLAPLIGGLLD---------TMWNWRAC----YLFLLVLCAGVTFSMA------------------------------
2 PsiBlast_PDB 33.3934% 154 - C4 -1VH4 - SUFD_ECOLI A:[39-75] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG------L--PTRKHENWK--YT-------------PLEGLINSQFVSI-----A-GEISPQQRDAL-----------ALTLDSVRLVFVDGRYVPALSDA---------TEGSGYEV----SINDDRQGLPDAIQAE------------------------------
1 PsiBlast_PDB 30.6734% 152 * C4 *2ZU0 - SUFD_ECOLI A:[39-75] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG------L--PTRKHENWK--YT-------------PLEGLINSQFVSI-----A-GEISPQQRDAL-----------ALTLDSVRLVFVDGRYVPALSDA---------TEGSGYEV----SINDDRQGLPDAIQAE------------------------------
16 HHSearch 23.825% 211 - C3 -2CFQ - LACY_ECOLI A:[280-300] ----------------------------------------------------------------------------------------------------------------------------------------------------PLI-------INRI--GGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFL-LVGCFKYITSQF--EVRF--------SAT---------IY-LV------C----FCFFKQLAMIFMSVLAGNM-------YESIG-------------FQGAYLVLGLV-----ALGFTLISV--------FTLSGPG------------PLSLLRRQVNEVA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9 HHSearch 21.1813% 99 - C3 -2GFP - EMRD_ECOLI A:[302-355] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLVPA-------------ALFFFGAGMLFPLATSGAM-EPF-PFLAGTA-----------GALVGGLQNIGSGVLASLSAMLP---------QTGQGSLG----LLMTLMGLLIVLCWLP------------------------------
22 Fugue 20.2325% 451 - C3 -2XPP - ? B:[15-38] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IDYGDRDSLFF-------------EIFGTGEEYRYVL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10 HHSearch 19.1811% 70 - C3 -3WDO - ? A:[303-358] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LVVGV-------------QLFFVAFNLMEALLPSLIS-KESPAGYKGTA-----------MGVYSTSQFLGVAIGGSLGGWID---------GMFDGQGV----FLAGAMLAAVWLAVAS------------------------------