@TOME V2.2
(Nov 2016)
Ref.
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : S29A4_HUMAN: (2015-12-10 )
MGSVGSQRLEEPSVAGTPDPGVVMSFTFDSHQLEEAAEAAQGQGLRARGVPAFTDTTLDEPVPDDRYHAIYFAMLLAGVGFLLPYNSFITDVDYLHHKYPGTSIVFDMSLTYILVALAAVLLNNVLVERLTLHTRITAGYLLALGPLLFISICDVWLQLFSRDQAYAINLAAVGTVAFGCTVQQSSFYGYTGMLPKRYTQGVMTGESTAGVMISLSRILTKLLLPDERASTLIFFLVSVALELLCFLLHLLVRRSRFVLFYTTRPRDSHRGRPGLGRGYGYRVHHDVVAGDVHFEHPAPALAPNESPKDSPAHEVTGSGGAYMRFDVPRPRVQRSWPTFRALLLHRYVVARVIWADMLSIAVTYFITLCLFPGLESEIRHCILGEWLPILIMAVFNLSDFVGKILAALPVDWRGTHLLACSCLRVVFIPLFILCVYPSGMPALRHPAWPCIFSLLMGISNGYFGSVPMILAAGKVSPKQRELAGNTMTVSYMSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILAGL
Atome Classification :
(20 SA)
.........10........20........30........40.......-----.50......--..60........70..-----......-----------80........90.-.......100..-.....110.......120....-------...130.........140.......150.......160.......170.-......180...--....--------190---------..-..------.----..200.......210....-------...220------------........230-----.......240-------.......------------.250.......260.....-----------..270.......280.......290---------......----..300.......310.-------------......320.......330----....--.--....340....----...350-------....--....360.....---..370.....-------..380..---------......390....---------...400...---....410....-------------------------.-..-.420-.-------.....--.430.......------440.........450.-------------......460.......470-.......480.-----------......490.......500....---------...510..----.....520.......530----------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MGSV
G
S
QRLEEPSVAGTPDP
G
V
V
M
S
F
TF
D
S
H
Q
L
E
E
A
A
E
A
AQGQGLRAR-----GVPAFTDTT--LDEPVPDD
R
Y
H
A
I
Y
F
A
-----
M
L
L
A
G
V
-----------
G
F
LL
P
Y
N
S
FI
T
D
V
-
D
Y
L
HHKYPG
T
S
I
-
V
F
D
M
S
L
T
Y
I
L
V
A
L
A
A
V
L
L
N
N
V
L
-------
V
E
R
L
--
T
L
H
T
R
ITA
G
Y
L
L
A
L
G
P
L
L
F
I
S
I
C
D
V
W
L
Q
L
FSRD
Q
A
Y
A
I
N
L
A
A
V
-
G
T
V
A
F
G
C
T
V
QQS--SFYG--------YTG---------ML-
P
K
------
R
----
Y
T
QGVMTGESTA
G
V
M
I
S
L
S
-------
R
I
L
T
K
-------------LLLPD
E
R
A
S
T
L
-----
I
F
F
L
V
S
V
A
L
--------
E
L
L
C
F
L
L
------------
H
L
L
V
RRS
R
F
V
L
F
Y
TTRPRD-----------SHRGRPGLGRGY
G
Y
R
V
H
H
D
V
VAGD----------
V
H
FEHP----APALAPNESPKDSPAH-------------EVTGSGG
A
Y
M
R
FDVPR
P
------
R
V
QR--S--
W
P
T
F
R
A
L
L
L
H
R
----
Y
V
V
A
R
--------
V
I
W
A
--
D
M
L
S
I
A
V
T
Y
F
I
T
---
L
C
LFPG
L
E
S
E
-------
I
R
H
C
-
I
L
---------
G
E
W
L
P
I
L
I
M
A
V
F
N
---------
L
S
D
F
V
G
K
I
L
---
A
ALPVD-WRGT-------------------------
H
-
L
L
-
A
C
S
C
-
L
-------
R
V
V
F
I
--
P
L
F
I
L
C
VYPSG------M--PALRHP
A
W
P
C
I
F
S
-------------
L
L
M
G
ISNGYFGSV
P
M
I
L
AA-GKVS
P
K
Q
R
ELA-----------G
N
T
M
T
V
S
Y
MSGL
T
L
G
S
A
V
A
Y
C
T
Y---------SLTRDAHG----
S
C
L
H
ASTANG
S
I
LAGL------------------------------
20
Fugue
90.43
15%
-95
- C3 -
2P4E
-
PCSK9_HUMAN
A:
[153-682]
S
I
P
W
N
L
E
R
I
T
P
P
R
Y
R
A
G
G
S
L
--
V
E
V
Y
L
L
D
T
S
-
I
Q
S
D
H
R
E
I
E
G
R
V
M
V
T
---------
D
F
E
N
V
P
--
E
E
D
Q
A
S
K
C
D
S
H
G
T
H
L
A
-----
G
V
V
S
G
R
-----------
D
A
G
V
A
K
G
A
S
M
R
S
L
-
R
V
L
N
C
Q
G
K
G
T
V
S
-
G
T
L
I
G
L
E
F
I
R
K
S
Q
L
V
Q
P
V
G
P
L
V
-------
V
-
L
L
--
P
L
A
G
G
Y
S
R
V
L
N
A
A
C
Q
R
L
A
R
A
G
V
V
L
V
T
A
A
G
N
F
R
D
D
A
C
L
Y
S
P
A
S
A
P
E
V
I
T
V
G
A
T
N
A
Q
D
Q
P
V
T
L
G
--------
T
L
G
T
N
F
G
RCVDL
F
A
-
P
G
------
E
----
D
I
I
G
A
S
S
D
C
S
T
C
F
V
S
Q
S
G
-----------
T
S
-------------
Q
A
A
A
H
V
A
G
I
A
A
-----
M
M
L
S
A
E
P
E
L
--------
T
L
A
E
L
R
Q
------------
R
L
I
H
F
S
A
K
D
V
I
N
E
A
W
F
P
E
D
-----------
Q
R
V
L
T
P
N
L
V
A
A
L
P
P
S
T
H
W
Q
L
F
C
R
T
----------
V
W
S
A
H
S
----
G
P
T
R
M
A
T
A
I
A
R
C
A
P
D
E
-------------
E
L
L
S
C
S
S
F
S
R
S
G
K
R
R
G
E
------
R
M
E
A
Q
G
G
--
K
L
V
C
R
A
H
N
A
F
G
GE
G
V
Y
A
I
A
R
--------
C
C
L
----
L
P
Q
A
N
C
S
V
H
T
A
---
P
P
A
E
A
S
M
G
T
R
-------
V
H
-
C
------------------------------------
H
Q
Q
G
H
V
L
---
T
G
C
S
S
H
-
W
E
V
E
-------------------------
D
-
L
G
-
P
N
Q
C
-
V
-------
G
H
R
E
A
--
S
I
H
A
S
C
C
H
A
P
G
------
L
E
C
K
V
K
E
H
G
I
P
A
P
Q
E
Q
-------------
V
T
V
A
C
E
E
G
W
------
T
L
T
G
-
C
S
A
L
P
G
-------------------------
T
S
H
V
L
G
------
A
Y
---------
A
V
----
D
N
----
T
C
V
V
R
S
R
S
E
E
A
V
T
A
V
A
I
C
C
R
S
R------------------------
26
Fugue
87.33
17%
-102
- C1 -
4QFH
2
?
A:
[6-615]
H
H
H
M
K
D
Q
Y
L
K
D
L
T
V
H
L
N
E
S
N
A
A
P
A
N
T
S
M
A
V
A
S
F
N
M
P
H
E
I
T
R
R
--
M
R
P
L
-----
G
V
D
A
--
D
T
S
--
L
T
S
C
P
S
W
R
R
L
Q
E
L
Y
E
I
HGSES
I
L
K
N
F
D
-----------
E
C
K
D
R
F
Q
R
Y
S
L
E
V
-
D
L
--
R
S
S
D
K
N
F
V
-
F
L
D
Y
S
K
T
H
I
N
D
E
I
K
D
V
L
F
K
L
V
E
E
R
G
I
R
A
F
M
R
A
L
--
F
A
G
E
K
V
N
T
A
E
N
R
S
V
L
H
I
A
L
R
N
R
S
N
R
P
I
F
V
N
G
H
D
V
M
P
L
V
N
K
V
L
E
-
Q
M
K
K
L
S
E
K
V
R
R
G
--
E
W
K
G
--------
Q
S
G
---------
K
--
P
I
------
R
----
H
V
V
N
I
G
I
G
G
S
D
L
G
P
M
M
A
C
E
A
L
RPFSD
R
R
I
S
M
-------------
H
F
V
S
N
I
D
G
T
H
L
-----
S
E
V
L
N
L
V
D
L
--------
E
S
T
L
F
I
I
A
S
KTFTT
Q
E
T
I
T
N
A
L
S
A
R
N
E
F
L
K
F
L
S
S
R
--------------------
G
I
S
E
A
G
A
V
A
K
H
F
V
A
L
S
T
N
-------------
A
E
K
----
V
K
E
F
G
I
D
E
E
N
M
F
Q
F
W
D
-------------
W
V
---
G
G
R
Y
S
L
W
S
A
I
G
L
------
S
V
M
I
--
S
IG
Y
D
N
F
V
E
L
L
T
G
A
----
H
I
M
D
E
--------
H
F
I
N
AP
T
E
N
N
L
P
I
I
L
A
L
V
---
G
I
W
Y
N
N
F
F
G
S
-------
E
T
Q
A
-
I
L
P
YDQYLWR
L
P
A
Y
L
Q
Q
L
D
M
E
S
N
G
KGATKNGRM
V
S
T
H
T
G
P
I
I
F
G
E
A
G
T
N
G
Q
-
H
A
F
Y
-------------------------
Q
-
L
I
-
H
Q
G
-----------
T
K
L
I
--
P
C
D
F
I
G
A
I
Q
T
Q
NYIGE
H
H
--
R
I
L
M
S
N
F
F
A
Q
T
E
A
-------------
L
M
I
G
K
T
P
E
E
V
K
R
E
--
L
E
S
A
-
G
G
K
S
E
D
E
I
Q
L
L
I
PQKTFTGG
R
P
S
N
S
L
L
V
K
A
L
T
P
R
A
L
G
A
I
I
A
M
Y
E
H
---------
K
V
L
V
Q
G
A
I
W
GIN
S
Y
D
Q
W
G
V
E
L
G
K
L
L
A
K
S
I
L
L
Q
LQPG
Q
K
V
T
NHD
S
S
T
N
G
L
I
E
L
F
N
E
R
SH
23
Fugue
83.96
19%
-113
- C2 -
4OK4
-
?
A:
[30-733]
----------
H
P
N
L
I
V
T
E
Q
D
V
A
N
I
A
A
S
W
E
S
Y
D
A
Y
A
E
Q
L
N
A
D
K
T
N
L
D
A
F
M
A
E
G
V
V
V
P
M
P
K
D
A
G
GG
Y
T
H
E
Q
H
K
R
N
Y
K
A
I
R
N
A
-----
G
F
L
Y
Q
V
TGD
E
K
Y
L
T
F
A
K
D
L
L
L
A
Y
A
K
M
Y
P
S
L
G
E
H
P
N
R
K
E
Q
S
P
G
R
-
L
F
W
Q
S
L
N
E
A
V
W
L
V
Y
S
I
Q
G
Y
D
A
I
-------
I
D
G
L
A
A
E
E
K
Q
E
I
E
S
G
V
F
L
P
M
A
K
F
L
S
V
E
S
P
E
T
F
N
K
I
H
N
L
G
T
W
A
V
A
A
V
G
M
T
-
G
Y
V
L
G
N
D
E
L
V
E
I
--
S
L
M
G
LDKTGKAG
F
M
K
---------
Q
L
-
D
K
LFSPDG
Y
----
Y
T
E
G
P
Y
Y
Q
R
Y
A
L
M
P
F
I
W
F
A
-------
K
A
I
E
T
N
EPERKIFEYRNN
I
L
L
K
A
V
Y
T
T
I
D
L
SYAG
Y
F
F
P
I
N
D
A
L
KDKGIDT
V
E
L
V
H
A
L
A
------------
I
V
Y
S
I
T
G
D
N
T
L
L
D
I
A
Q
E
Q
G
RISLT
G
D
G
L
K
V
A
K
A
V
G
E
G
L
T
Q
P
Y
N
Y
R
---
S
I
L
L
G
D
G
ADGDQ
G
A
L
S
I
H
R
L
G
E
G
HN
H
M
A
L
V
A
K
N
T
S
Q
G
M
G
H
G
H
FDKL
N
W
L
L
Y
D
NGN
E
I
V
T
D
Y
G
A
A
R
Y
L
N
V
E
A
K
YGGHYL
A
E
N
N
--
T
--
W
A
--
K
Q
T
I
A
H
N
----
T
L
V
V
N
EQSHFYGD
V
T
T
A
--
D
L
H
H
P
E
V
L
S
F
Y
S
G
ED
Y
Q
L
S
S
A
K
E
A
N
AYDG
V
E
F
V
R
S
M
-
L
L
V
N
V
------
P
S
L
E
H
P
I
V
V
D
V
L
N
---------
V
S
A
D
K
A
S
T
F
---
D
-
L
P
L
Y
-
F
N
G
Q
IIDFS
F
K
V
K
DNKNVMKMLGKRNGYQ
H
-
L
W
-
L
R
N
T
-
A
P
V
G
D
A
S
E
R
A
T
W
I
L
D
D
R
F
Y
S
Y
A
F
V
T
S
------
T
--
P
S
K
K
Q
N
V
L
I
A
E
L
G
ANDPNYNL
R
Q
Q
Q
V
L
I
R
R
V
E
K
A
K
Q
A
S
F
V
S
V
L
E
P
H
G
K
Y
D
G
S
L
E
T
T
S
-----------
G
A
Y
S
N
V
K
S
V
K
H
V
S
E
N
G
K
D
V
V
V
V
D
L
KDG
S
N
V
V
V
A
L
S
Y
N
A
N
S
----
E
Q
V
H
K
V
N
A
G
E
E
A
I
E
W
K
G
F
S
S
V
V
V-----------------------
11
HHSearch
53.90
11%
-121
- C3 -
3WDO
-
?
A:
[11-155]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
W
G
--
L
G
T
V
F
S
L
R
M
L
G
M
---
F
M
V
L
P
V
L
T
T
Y
-------
G
M
A
L
Q
G
A
S--------
E
A
L
I
G
-
I
A
I
G
I
Y
G
---------
L
T
Q
A
V
F
Q
I
P
---
F
G
L
L
S
D
R
I
G
R
K
-------------------------
P
L
I
V
-
G
G
L
A
-
V
-------
F
A
A
G
S
-----
V
I
A
A
L
S
--------------
D
S
I
W
G
I
I
L
G
R
-------------
A
L
Q
G
S
G
A
--
I
A
A
A
V
M
A
L
L
S
-
D
L
T
R
E
Q
N
R
T
K
A
-----------
M
A
F
I
G
V
S
F
G
I
T
F
A
I
A
M
V
L
G
P
I
I
T
---------
H
K
L
G
L
H
A
L
----
F
W
M
I
A
I
L
A
T
T
G
I
A
L
T
I
------------------------------
8
HHSearch
45.58
12%
-97
- C3 -
3O7Q
1
FUCP_ECOLI
A:
[47-170]
----------------------------------------------------------------------------------------------------------------
I
L
L
-
P
Q
F
Q
Q
A
F
T
L
T
N
F
Q
A
G
L
I
Q
S
A
F
Y
F
G
Y
F
I
I
P
I
P
A
G
I
L
-------
M
K
K
L
--
S
Y
K
A
G
I
I
T
G
L
F
L
Y
A
L
G
A
A
L
F
W
P
A
A
-------
E
I
M
N
Y
T
L
F
L
V
G
L
-
F
I
I
A
A
G
L
G
C
L
E
T
--
A
A
N
P
--------
F
V
T
---------
V
L
G
P
E
------
S
S
G
H
F
R
L
N
L
A
Q
T
F
N
S
F
G
A
I
I
A
V
V
F
-------
G
Q
S
L
I
-------------
L
S
N
V
P
H
Q
S
Q
D
V
-----
L
D
K
M
S
P
E
Q
L
--------
S
A
Y
K
H
S
L
------------
V
L
S
V
Q
T
P
Y
M
I
I
V
A
I
V
L
L
V
A
-----------
L
L
I
M
L
T
K
F
P
A
L
Q
S
D
N
H
S
D
A
K
Q
G
S
F
----------
S
A
S
L
S
R
----
L
A
R
I
R
H
W
R
W
A
V
L
A
Q
F
C
-------------
Y
V
G
A
Q
T
A
C
W
S
Y
L
I
R
Y
A
V
------
E
E
I
P
--
G
--
M
T
A
G
F
A
A
N
Y
L
T
----
G
T
M
V
C
--------
F
F
I
G
--
R
F
T
G
T
W
L
I
S
R
F
A
---
P
H
K
V
L
A
A
Y
A
L
-------
I
A
M
A
-
L
C
---------
L
I
S
A
F
A
G
G
H
V
G
L
I
---------
A
L
T
L
C
S
A
F
M
---
S
I
Q
Y
P
T
-
I
F
S
L
-------------------------
G
-
I
K
-
N
L
G
Q
-
D
-------
T
K
Y
G
S
--
S
F
I
V
M
T
I
I
G
G
G
------
I
--
V
T
P
V
M
G
F
V
S
D
A
A
G
-------------
N
I
P
T
A
E
L
I
P
A
L
C
F
A
V
I
F
I
F
-
A
R
F
R
S
Q
T
---------------------------------------------------------------------------------------------------------
15
HHSearch
45.55
11%
-90
- C3 -
3O7Q
1
FUCP_ECOLI
A:
[65-173]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
Q
S
A
F
Y
---------
F
G
Y
F
I
I
P
I
P
---
A
G
I
L
M
K
K
L
S
Y
K
-------------------------
A
-
G
I
-
I
T
G
L
F
L
-------
Y
A
L
G
A
--
A
L
F
W
P
A
A
E
--------------
I
M
N
Y
T
L
F
L
V
G
L
-------------
F
I
I
A
A
G
L
G
C
L
E
T
A
A
N
P
F
V
T
-
V
L
G
P
E
S
S
G
H
F
R
-----------
L
N
L
A
Q
T
F
N
S
F
G
A
I
I
A
V
V
F
G
Q
S
L
I
---------
L
S
N
V
P
H
Q
S
----
Q
D
V
L
D
K
M
S
P
E
Q
L
S
A
Y
K
------------------------------
14
HHSearch
40.30
13%
-86
- C3 -
1PW4
-
GLPT_ECOLI
A:
[67-174]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
A
L
S
G
I
S
---------
I
A
Y
G
F
S
K
F
I
---
M
G
S
V
S
D
R
S
N
P
R
-------------------------
V
F
L
P
-
A
G
L
I
-
L
-------
A
A
A
V
M
--
L
F
M
G
F
V
P
W
-------------
A
T
S
S
I
A
V
M
F
V
L
L
-------------
F
L
C
G
W
F
Q
G
M
G
W
P
P
C
G
R
T
M
V
-
H
W
W
S
Q
K
E
R
G
G
I
-----------
V
S
V
W
N
C
A
H
N
V
G
G
G
I
P
P
L
L
F
L
L
G
M
---------
A
W
F
N
D
W
H
A
----
A
L
Y
M
P
A
F
C
A
I
L
V
A
L
F
A
------------------------------
5
PsiBlast_PDB
39.80
30%
-33
- C3 -
4NV5
1
VKOR_SYNJB
A:
[80-112]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
--
G
V
L
A
L
A
V
L
P
D
-------
L
--
P
L
V
K
R
W
R
W
P
A
L
F
G
-------------
L
V
S
A
M
T
A
F
E
M
Y
M
L
Y
L
M
V
A
V
-
L
R
Q
F
C
M
Y
C
T
T
A
-----------
I
I
L
V
A
G
L
G
L
V
T
V
L
G
H
R
W
L
G
G
K
L
A
---------
F
S
Y
I
L
V
A
F
----
L
T
L
V
T
T
I
G
V
Y
A
N
Q
V
P
P
------------------------------
4
PsiBlast_PDB
36.77
30%
-32
- C3 -
4NV2
1
VKOR_SYNJB
A:
[80-112]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
--
G
V
L
A
L
A
V
L
P
D
----------
P
L
V
K
R
W
R
W
P
A
L
F
G
-------------
L
V
S
A
M
T
A
F
E
M
Y
M
L
Y
L
M
V
A
V
-
L
R
Q
F
C
M
Y
C
T
T
A
-----------
I
I
L
V
A
G
L
G
L
V
T
V
L
G
H
R
W
L
D
G
G
K
L
---------
A
F
S
Y
I
L
V
A
----
F
L
T
L
V
T
T
I
G
V
Y
A
N
Q
V
P
------------------------------
17
Fugue
36.09
13%
127
- C3 -
2CPG
-
COPG_STRAG
A:
[1-43]
-------------------
M
K
K
R
L
T
I
T
L
S
E
S
V
L
E
N
L
E
K
M
A
R
E
M
G
L
S
K
S
-----
A
M
I
S
V
A
L
E
N
--
Y
K
K
G
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
35.26
30%
-33
- C3 -
4NV6
1
VKOR_SYNJB
A:
[80-112]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
--
G
V
L
A
L
A
V
L
P
D
-------
L
--
P
L
V
K
R
W
R
W
P
A
L
F
G
-------------
L
V
S
A
M
T
A
F
E
M
Y
M
L
Y
L
M
V
A
V
-
L
R
Q
F
C
M
Y
C
T
T
A
-----------
I
I
L
V
A
G
L
G
L
V
T
V
L
G
H
R
W
L
G
G
K
L
A
---------
F
S
Y
I
L
V
A
F
----
L
T
L
V
T
T
I
G
V
Y
A
N
Q
V
P
P
------------------------------
19
Fugue
35.12
14%
124
* C3 *
1EA4
1
COPG_STRAG
A:
[2-43]
--------------------
K
K
R
L
T
I
T
L
S
E
S
V
L
E
N
L
E
K
M
A
R
E
M
G
L
S
K
S
-----
A
M
I
S
V
A
L
E
N
--
Y
K
K
G
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
34.89
30%
-58
- C3 -
3KP9
1
VKOR_SYNJB
A:
[80-112]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
--
G
V
L
A
L
A
V
L
P
--------
L
--
P
L
V
K
R
W
R
W
P
A
L
F
G
-------------
L
V
S
A
M
T
A
F
E
M
Y
M
L
Y
L
M
V
A
V
-
L
R
Q
F
C
M
Y
C
T
T
A
-----------
I
I
L
V
A
G
L
G
L
V
T
V
L
G
H
R
W
L
D
G
G
K
L
---------
A
F
S
Y
I
L
V
A
----
F
L
T
L
V
T
T
I
G
V
Y
A
N
Q
V
P
------------------------------
12
HHSearch
33.74
12%
-58
- C3 -
2GFP
-
EMRD_ECOLI
A:
[47-153]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
M
G
A
Y
L
---------
L
T
Y
G
V
S
Q
L
F
---
Y
G
P
I
S
D
R
V
G
R
R
-------------------------
P
-
V
I
L
V
G
M
S
-
I
-------
F
M
L
A
-----
T
L
V
A
V
T
T
--------------
S
S
L
T
V
L
I
A
A
S
-------------
A
M
Q
G
M
G
T
G
V
G
G
V
M
A
R
T
L
P
R
-
D
L
Y
E
R
T
Q
L
R
H
A
-----------
N
S
L
L
N
M
G
I
L
V
S
P
L
L
A
P
L
I
G
G
L
L
D
---------
T
M
W
N
W
R
A
C
----
Y
L
F
L
L
V
L
C
A
G
V
T
F
S
M
A
------------------------------
2
PsiBlast_PDB
33.39
34%
154
- C4 -
1VH4
-
SUFD_ECOLI
A:
[39-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
------
L
--
P
T
R
K
H
E
N
W
K
--
Y
T
-------------
P
L
E
G
L
I
N
S
Q
F
V
S
I
-----
A
-
G
E
I
S
P
Q
Q
R
D
A
L
-----------
A
L
T
L
D
S
V
R
L
V
F
V
D
G
R
Y
V
P
A
L
S
D
A
---------
T
E
G
S
G
Y
E
V
----
S
I
N
D
D
R
Q
G
L
P
D
A
I
Q
A
E
------------------------------
1
PsiBlast_PDB
30.67
34%
152
* C4 *
2ZU0
-
SUFD_ECOLI
A:
[39-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
------
L
--
P
T
R
K
H
E
N
W
K
--
Y
T
-------------
P
L
E
G
L
I
N
S
Q
F
V
S
I
-----
A
-
G
E
I
S
P
Q
Q
R
D
A
L
-----------
A
L
T
L
D
S
V
R
L
V
F
V
D
G
R
Y
V
P
A
L
S
D
A
---------
T
E
G
S
G
Y
E
V
----
S
I
N
D
D
R
Q
G
L
P
D
A
I
Q
A
E
------------------------------
16
HHSearch
23.82
5%
211
- C3 -
2CFQ
-
LACY_ECOLI
A:
[280-300]
----------------------------------------------------------------------------------------------------------------------------------------------------
P
L
I
-------
I
N
R
I
--
G
G
K
N
A
L
L
L
A
G
T
I
M
S
V
R
I
I
G
S
S
F
A
T
S
A
L
E
V
V
I
L
K
T
L
H
M
F
E
V
P
F
L
-
L
V
G
C
F
K
Y
I
T
S
Q
F
--
E
V
R
F
--------
S
A
T
---------
I
Y
-
L
V
------
C
----
F
C
F
F
K
Q
L
A
M
I
F
M
S
V
L
A
G
N
M
-------
Y
E
S
I
G
-------------
F
Q
G
A
Y
L
V
L
G
L
V
-----
A
L
G
F
T
L
I
S
V
--------
F
T
L
S
G
P
G
------------
P
L
S
L
L
R
R
Q
V
N
E
V
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
21.18
13%
99
- C3 -
2GFP
-
EMRD_ECOLI
A:
[302-355]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
V
P
A
-------------
A
L
F
F
F
G
A
G
M
L
F
P
L
A
T
S
G
A
M
-
E
P
F
-
P
F
L
A
G
T
A
-----------
G
A
L
V
G
G
L
Q
N
I
G
S
G
V
L
A
S
L
S
A
M
L
P
---------
Q
T
G
Q
G
S
L
G
----
L
L
M
T
L
M
G
L
L
I
V
L
C
W
L
P
------------------------------
22
Fugue
20.23
25%
451
- C3 -
2XPP
-
?
B:
[15-38]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
Y
G
D
R
D
S
L
F
F
-------------
E
I
F
G
T
G
E
E
Y
R
Y
V
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
19.18
11%
70
- C3 -
3WDO
-
?
A:
[303-358]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
V
G
V
-------------
Q
L
F
F
V
A
F
N
L
M
E
A
L
L
P
S
L
I
S
-
K
E
S
P
A
G
Y
K
G
T
A
-----------
M
G
V
Y
S
T
S
Q
F
L
G
V
A
I
G
G
S
L
G
G
W
I
D
---------
G
M
F
D
G
Q
G
V
----
F
L
A
G
A
M
L
A
A
V
W
L
A
V
A
S
------------------------------