@TOME V2.2
(Nov 2016)
Ref.
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : S35A3_HUMAN: (2015-12-10 )
MFANLKYVSLGILVFQTTSLVLTMRYSRTLKEEGPRYLSSTAVVVAELLKIMACILLVYKDSKCSLRALNRVLHDEILNKPMETLKLAIPSGIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVSMLSKKLGVYQWLSLVILMTGVAFVQWPSDSQLDSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTSVFFLGAILVITATFLYGYDPKPAGNPTKA
Atome Classification :
(14 SA)
------------------------------------------------------------.........10..----------------------.....-----.20........30........40........50...--..----------...60........70...---.....80--....-.....90----.........-------100..---------...----..110.------.-..----...120....-....130---------------------------..------......140---------..---------...-----....-150.......-160.......170--..--...-------...180...--....190.--------------......200..--.....-.210......----.220---.-----......---.----.-230.......240....--------------.----..-------250..----------....--.260...-.....270--------.-----.-..------...---------..280.....------------..290----------.---------------------....------.------------.300.......310...--..-----..--320...-----------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------MFA
N
L
K
Y
V
S
L
G
I
L
----------------------
V
F
QT
T
-----
S
L
V
L
T
M
R
Y
S
R
T
L
K
EEG
P
R
Y
L
S
S
T
A
V
V
V
A
E
L
L
K
I
M
A
C
--
I
L
----------
L
V
YKDSK
C
S
L
R
A
L
N
R
V
L
H
---
D
E
I
L
NK---
P
M
E
T
-
L
K
L
AIP-----SG
I
Y
T
LQN
N
-------
L
L
Y
V
A
---------LSN----LD
A
A
T
Y
------
Q
-
V
T
----
Y
Q
L
K
-
I
L
T
T
A
-
L
F
S
V
S
M
----------------------------
L
S
------
K
K
L
G
V
Y
Q
-----------
W
L
---------
S
L
V
-----
I
L
M
T-G
V
A
F
V
QWPSD-SQL
D
S
K
E
LSA
G
S
---
Q
F
--
V
G
L
-------
M
A
V
L
T
A
C
F
S--SG
F
A
G
V
Y
F
--------------
E
K
I
L
K
E
T
-
K
Q
S
--
V
W
I
R
N-I
Q
L
G
F
F
G
S
I
F
----
G
L
-----
M
-----
G
V
Y
I
YD---
G
----
E
-
L
VSKNGFF
Q
G
Y
N
R
L
T
W
I
--------------
V
----
V
V
-------
L
Q
AL
G
----------
G
L
V
I
--
A
A
V
-
I
K
Y
-
A
D
N
I
L
K
----------
G
-----
F
-
A
T
------
S
L
S
---------
I
I
L
S
T
L
I
S
Y
F
------------
W
L
Q
D
F----------V---------------------
P
T
S
V
------
F
------------
F
L
G
A
I
L
V
I
T
A
T
F
L
YGYD--PK-----PA--GNPTKA-----------
18
Fugue
89.48
17%
-134
- C2 -
4FS7
2
?
A:
[2-394]
-----------------------------------------------------------------
Y
D
F
V
I
D
E
I
----------------------
T
Y
N
F
T
-----
K
E
H
G
T
V
E
V
S
G
L
R
E
F
L
N
P
L
V
V
N
I
P
P
---------------
V
----------
V
T
Y
K
D
N
K
Y
D
V
V
S
I
G
Y
-------
A
A
F
Q
G
---
C
R
K
V
-
T
E
I
K
I
P
-----
S
T
V
R
E
I
G
E
F
AFENCSK
L
E
I
I
N
---------
I
P
D
SVKM
I
G
R
C
T
F
------
S
-
G
C
----
Y
A
L
K
S
I
L
L
P
L
M
L
K
S
I
G
V
----------------------------
E
A
FKGCDF
K
E
I
T
I
P
E
-----------
G
V
---------
T
V
I
GDEAF
A
T
C
E
-
S
L
E
Y
V
S
L
P
D
S
M
E
T
L
H
N
G
L
F
S
G
C
G
---
K
L
K
S
I
K
L
-------
P
R
N
L
K
I
I
R
D
--
Y
C
F
A
E
C
I
L
LE
N
M
E
F
P
NSLY
Y
L
G
D
F
A
L
S
K
T
G
V
K
N
--
I
I
I
P
D
-
S
F
T
E
L
G
K
S
V
F
YGCT
D
L
-----
E
-----
S
I
S
I
Q
N
---
N
----
K
-
L
R
I
G
G
S
L
F
Y
N
C
S
G
L
K
K
V
--------------
I
Y
G
S
V
I
V
PEKTFYG
C
S
S
L
T
----------
E
V
K
L
--
L
D
S
-
V
K
F
I
G
E
E
A
F
E
----------
S
-----
C
-
T
S
------
L
V
S
---------
I
D
L
P
Y
L
V
E
E
I
------------
G
K
R
S
F
RGCTSLS
N
I
N
F
---------------------
P
L
S
L
RKIGAN
A
------------
F
Q
G
C
I
N
L
K
K
V
E
L
P
K
R
L
E
--
Q
Y
-----
R
Y
DF
E
D
T
T
K
F
K
W
I
K-------
15
Fugue
78.04
11%
-99
* C3 *
2GSH
2
RHMD_SALTY
A:
[4-406]
---------------------------------------------------------N
I
M
T
L
P
K
I
K
H
V
R
A
W
F
I
G
GATAEKGAGGGDYHDQGGNHW
I
D
D
H
I
-----
A
T
P
M
S
K
Y
R
D
Y
E
Q
S
R
Q
S
F
G
I
N
V
L
G
T
L
I
V
E
V
E
A
E
N
R
Q
T
--
G
F
----------
A
V
S
T
A
G
E
M
G
C
F
I
V
E
K
H
L
N
---
R
F
I
E
G
K
CVS
D
I
K
L
-
I
H
D
Q
M
L
-----
G
A
T
M
Y
Y
S
G
S
GG-----
L
V
M
N
T
---------
I
S
C
----
V
D
L
A
L
W
------
D
-
L
F
----
G
K
V
V
-
G
L
P
V
Y
-
K
L
L
G
G
A
----------------------------
V
R
------
D
E
I
Q
F
Y
A
T
G
AR
P
D
L
A
K
E
M
G
F
---------
I
G
G
-----
K
M
P
T
-
H
W
G
P
H
D
G
D
A
G
-
I
R
K
D
A
A
M
V
A
D
M
R
---
E
K
--
C
G
P
-------
D
F
W
L
M
L
D
C
W
--
M
S
Q
D
V
N
Y
A
--------------
T
K
L
A
H
A
C
-
A
P
F
NL
K
W
I
E
E
C
L
P
P
Q
Q
Y
E
G
Y
R
----
E
L
-----
K
R
N
APA
G
M
M
V
T
S
---
G
----
E
H
H
G
T
L
Q
S
F
R
T
L
A
E
T
G
I
D
I
--------------
M
----
Q
P
D------
V
G
W
C
G
----------
G
L
T
T
--
L
V
E
-
I
A
A
-
L
A
K
S
R
G
Q
L
V
V
P
HGSS
V
Y
-----
S
-
H
H
------
A
V
I
---------
T
F
T
N
T
P
F
S
E
F
L
M
TSPDCSTLRP
Q
F
D
P
I
----------
L
---------------------
L
D
E
P
------
V
------------
P
V
N
G
R
I
H
K
S
V
L
D
K
P
G
F
G
--
V
E
LNRDC
H
L
--
K
R
P
Y
S
H
-----------
10
Fugue
73.65
16%
-100
- C1 -
4HE8
1
NQO13_THET8
G:
[1-467]
MVVLAVLLPVVFGALLLLGLPRALGVLGAGLSFLLNLYLFLTHPGGVAHAFQAPLLPGAG
V
Y
W
A
F
G
L
D
G
L
S
A
L
----------------------
F
F
L
T
I
-----
A
L
T
V
F
L
G
A
L
V
A
R
V
E
G
R
--
F
L
G
L
A
L
L
M
E
G
L
L
L
G
L
F
A
A
RD
L
L
----------
V
F
Y
V
F
F
E
A
A
L
I
P
A
L
L
M
L
Y
LYG
G
E
G
R
T
R
---
A
L
Y
T
-
F
V
L
F
T
L
-----
V
G
S
L
P
M
L
A
A
-------
V
L
G
A
R
LLSGSPTFL
L
E
D
----
L
L
A
H
P
L
------
Q
-
E
E
----
A
A
F
W
-
V
F
L
G
F
-
A
L
A
F
A
I
KTPLFPLHAWLPPFHQENHPSGLADALG
T
L
------
Y
K
V
G
V
F
A
-----------
F
F
---------
R
F
A
-----
I
P
L
A
-
P
E
G
F
A
Q
A
Q
G
L
-
L
L
F
L
A
A
L
S
A
L
Y
G
---
A
W
--
V
A
F
AAKDFKT
L
L
A
Y
A
G
L
S
H
--
M
G
V
A
A
L
G
V
--------------
F
S
G
T
P
E
G
-
A
M
G
--
G
L
Y
L
L
-
A
A
S
G
V
Y
T
G
G
L
----
F
L
-----
L
-----
A
G
R
L
Y
E
---
R
TGTL
E
-
I
G
R
Y
R
G
L
A
Q
S
A
P
G
L
A
A
L
--------------
A
----
L
I
-------
L
F
L
A
M
VGLPGLSGFP
G
E
F
L
--
T
L
L
-
G
A
Y
-
K
A
S
P
W
L
----------
A
-----
A
-
L
A
------
F
L
S
---------
V
I
A
S
A
A
Y
A
L
T
------------
A
F
Q
K
T
----------
F
---------------------
W
E
E
G
------
G
SGVKDLAGAE--
W
G
F
A
L
L
S
V
L
A
L
L
L
M
G
V
F
--
P
G
-----
Y
F
--
A
R
G
L
H
P
LAEAFAKLLGG
2
PsiBlast_PDB
70.17
25%
-58
- C1 -
4K1N
-
CTNA1_MOUSE
A:
[486-583]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
---------
Q
E
N
----
M
D
L
F
K
E
------
Q
-
W
E
----
K
Q
V
R
-
V
L
T
D
A
-
V
D
D
I
T
S
----------------------------
I
D
------
D
F
L
A
V
S
E
-----------
N
H
---------
I
L
E
-----
D
V
N
K
-
C
V
I
A
L
Q
---
E
-
K
D
V
D
G
L
D
R
T
A
G
A
I
R
G
R
A
--
A
R
V
-------
I
H
V
V
T
S
E
M
D
--
N
Y
E
P
G
V
Y
T
--------------
E
K
V
L
E
A
T
-
K
L
L
--
S
N
T
V
M
-
P
R
F
T
E
Q
V
E
A
A
----
V
E
-----
A
-----
L
S
S
D
P
A
---
Q
----
P
-
M
D
E
N
E
F
I
D
A
S
R
L
V
Y
D
G
I
--------------
R
----
D
I
-------
R
K
A
V
L
----------
M
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
69.10
12%
-112
* C2 *
3BG1
-
NU145_YEAST
B:
[130-552]
--D
E
I
D
N
A
K
L
I
M
K
E
R
RFTAS
Y
T
F
A
K
F
S
TGS
M
L
L
T
K
D
IVGKSGVSI
K
R
L
P
TELQRKFLFD
D
V
Y
L
D
K
E
I
E
K
V
T
I
E
----------------------
A
R
K
S
N
-----
P
Y
P
Q
I
S
E
S
S
L
L
F
K
D
A
L
D
Y
M
E
K
T
S
--
S
D
Y
N
L
W
K
L
S
S
I
--
L
F
D
P
V
S
Y
P
Y
KTD
N
D
Q
V
K
M
A
L
L
K
K
E
R
H
C
R
L
T
---
S
W
I
V
S
Q
---
I
G
P
E
-
I
E
E
K
I
R
-----
N
S
S
N
E
I
E
Q
I
-------
F
L
Y
L
L
---------
L
N
D
----
V
V
R
A
S
K
------
L
-
A
I
E
S
KN
G
H
L
S
-
V
L
I
S
Y
-
L
G
S
N
D
P
----------------------------
R
I
------
R
D
L
A
E
L
Q
-----------
L
Q
K
W
S
TGGCSI
D
K
N
-----
I
S
K
I
-
Y
K
L
L
S
G
S
P
F
E
-
G
L
F
S
L
K
E
L
E
S
E
F
---
S
W
--
L
C
L
-------
L
N
L
T
L
C
Y
G
Q
--
I
D
E
Y
S
--
L
--------------
E
S
L
V
Q
S
H
-
L
D
K
--------
F
S
L
P
Y
D
D
P
I
G
----
V
I
-----
F
-----
Q
L
Y
A
A
N
EN
T
E
----
K
-
L
Y
K
E
V
R
Q
R
T
N
A
L
D
V
Q
F
C
--------------
W
----
Y
L
-------
I
Q
T
L
R
----------
F
N
G
T
--
R
V
F
S
K
E
T
-
S
D
E
A
T
F
----------
A
-----
F
-
A
A
------
Q
L
E
F
A
QL
H
G
H
S
L
F
V
S
C
F
L
N
D
D
K
------------
A
A
E
D
T
----------
I
---------------------
K
R
L
V
------
M
R
E
I
T
L
L
R
ASTND
H
I
L
N
R
L
K
I
P
S
Q
L
I
F
N
A
Q
--
A
L
-----
K
D
--
R
Y
E
G
N
Y
L----------
16
Fugue
67.56
10%
-118
- C3 -
2VEO
1
LIPA_CANAR
A:
[11-440]
--------------------------AALPNPYDDPFYTTPSNIGTFAKGQVI
Q
S
R
K
V
P
T
D
I
G
N
A
N
N
A
A
S
F
Q
L
----------------------
Q
Y
R
T
T
N
TQN
E
A
V
A
D
V
A
T
V
W
I
P
A
K
P
A
S
P
P
K
I
F
S
Y
Q
V
Y
E
D
A
T
A
L
D
C
A
P
--
S
Y
----------
S
Y
L
T
G
L
D
Q
P
N
K
V
T
A
V
L
D
T
---
P
I
I
I
G
W
---
A
L
Q
Q
G
Y
Y
V
V
S
S
DHEGF
K
A
A
F
I
A
G
Y
E
-------
E
G
M
A
I
---------
L
D
G
----
I
R
A
L
K
N
Y
Q
NLPS
D
-
S
K
----
V
A
L
E
-
G
Y
S
G
G
-
A
H
A
T
V
W
----------------------------
A
T
------
S
L
A
D
S
Y
-----------------------
A
P
E
-----
L
N
I
V
-
G
A
S
H
G
G
T
P
V
S
-
A
K
D
T
F
T
F
L
N
G
G
P
---
F
A
--
G
F
A
-------
L
A
G
V
S
G
L
S
L
A
H
P
D
M
E
S
F
I
E
--------------
A
R
L
N
A
K
G
-
Q
Q
T
--
L
K
Q
I
R
-
G
R
G
F
C
L
P
Q
V
V
----
L
T
YPFLN
V
-----
F
S
L
V
N
D
---
T
----
N
-
L
L
N
E
A
P
I
A
G
I
L
K
Q
E
T
V
V
QAEAS
Y
T
V
S
V
P
K
F
P
R
----
F
I
-------
W
H
A
I
P
----------
D
E
I
V
P
Y
Q
P
A
-
A
T
Y
-
V
K
E
Q
C
A
----------
K
G
A
N
I
N
F
-
S
P
Y
PIAE
H
L
T
A
---------
E
I
F
G
L
V
P
S
L
W
------------
F
I
K
Q
A
----------
F
D
GTTPKVICGT
P
I
P
A
I
A
GITT
P
S
A
D
------
Q
------------
V
L
G
S
D
L
A
N
Q
L
R
S
L
N
G
K
Q
SA
F
G
-----
K
P
--
F
G
P
I
T
P
-----------
1
PsiBlast_PDB
55.35
25%
-68
- C1 -
4IGG
-
CTNA1_HUMAN
A:
[398-496]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
---------
Q
E
N
----
M
D
L
F
K
E
------
Q
-
W
E
----
K
Q
V
R
-
V
L
T
D
A
-
V
D
D
I
T
S
----------------------------
I
D
------
D
F
L
A
V
S
E
-----------
N
H
---------
I
L
E
-----
D
V
N
K
-
C
V
I
A
L
Q
---
E
-
K
D
V
D
G
L
D
R
T
A
G
A
I
R
G
R
A
--
A
R
V
-------
I
H
V
V
T
S
E
M
D
--
N
Y
E
P
G
V
Y
T
--------------
E
K
V
L
E
A
T
-
K
L
L
--
S
N
T
V
M
-
P
R
F
T
E
Q
V
E
A
A
----
V
E
-----
A
-----
L
S
S
D
P
A
---
Q
----
P
-
M
D
E
N
E
F
I
D
A
S
R
L
V
Y
D
G
I
--------------
R
----
D
I
-------
R
K
A
V
L
----------
M
I
R
T
--
P
G
Q
-
S
A
R
-
A
I
M
A
Q
L
----------
P
-----
Q
-
E
Q
------
K
A
K
---------
I
A
E
Q
V
A
S
F
Q
E
------------
E
K
S
K
L
----------
D
---------------------
A
E
V
S
------
K
------------
W
D
D
S
G
N
D
I
I
V
L
A
K
Q
M
C
M
--
I
M
-----
M
E
--
M
T
D
F
T
R
-----------
3
HHSearch
44.69
16%
-68
- C- -
3B5D
1
EMRE_ECOLI
A:
[31-105]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
P
S
V
G
T
-----
I
I
C
Y
C
A
S
F
W
-------
L
L
A
Q
T
---------
L
A
Y
----
I
P
T
G
I
A
------
Y
A
I
W
----
S
G
V
G
-
I
V
L
I
S
-
L
L
S
W
G
F
----------------------------
F
G
------
Q
R
L
D
L
P
A
-----------
I
I
---------
G
M
M
-----
L
I
C
A
-
G
V
L
I
I
N
L
L
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
41.35
11%
-247
- C- -
3B5D
1
EMRE_ECOLI
A:
[34-105]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
--------------
T
----
I
I
-------
C
Y
C
A
S
----------
F
W
L
L
--
A
Q
T
-
L
A
Y
-
I
P
T
G
I
A
----------
Y
A
----
I
-
W
S
------
G
V
G
---------
I
V
L
I
S
L
L
S
W
G
------------
F
F
-
G
Q
----------
R
---------------------
L
D
L
P
------
A
------------
I
I
G
M
M
L
I
C
A
G
V
L
I
I
N
L
L
--
S
---------------------------
4
HHSearch
32.10
10%
-73
- C1 -
2I68
-
EMRE_ECOLI
A:
[35-104]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--------------
T
----
I
I
-------
C
Y
C
A
S
----------
F
W
L
L
--
A
Q
T
-
L
A
------
I
A
----------
Y
-----
A
I
W
S
------
G
V
G
---------
I
V
L
I
S
L
L
S
W
G
------------
F
F
-
G
-------------------------------------------
A
------------
I
I
G
M
M
L
I
C
A
G
V
L
I
I
N
L
L
------------------------------
14
Fugue
23.22
25%
108
* C1 *
2E74
3
PETN_MASLA
H:
[1-29]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
I
D
V
L
G
-----------
W
V
---------
A
L
L
-----
V
V
F
T
W
S
I
A
M
V
V
W
G
R
N
-
G
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
11.53
13%
429
- C1 -
2HAC
-
CD3Z_HUMAN
A:
[13-28]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
-
I
L
T
A
L
F
----------------------------
L
R
------
V
K
F
S
R
S
A
-----------
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
9.72
31%
496
- C1 -
2JP3
-
FXYD4_RAT
A:
[25-37]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
G
L
L
C
I
A
G
I
A
L
A
L
S
G
--
K
C
-----
K
C
--
R
R
N
H
T
P
-----------
8
HHSearch
5.70
7%
312
- C1 -
3WU2
-
PSBT_THEVL
T:
[17-28]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
F
F
F
A
I
------------
F
F
-
R
E
----------
P
---------------------
P
R
I
T
------
A
------------
N
L
W
E
R
F
C
N
W
V
T
S
T
D
N
R
L
--
Y
V
-----
G
W
--
F
G
V
I
M
I
-----------