@TOME V2.2
(Nov 2016)

Ref. - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : T0851: (2014-07-10 )
SNAMPFLPDPGEPSPLKVVIAGAGYVGTCLAVTLAGRGAEVVAVDSDPGTVADLRAGRCRLPEPGLAGAVRDLAATGRLTASTSYDPVGAADVVIVTVGTPTDAGHEMVTDQLVAACEQIAPRLRAGQLVILKSTVSPGTTRTLVAPLLESGGLVHERDFGLAFCPERLAEGVALAQVRTLPVVVGGCGPRSAAAAERFWRSALGVDVRQVPSAESAEVVKLATNWWIDANVAIANELARYCAVLGVDVLDVIGAANTLPKGSSMVNLLLPGVGVGGSCLTKDPWMAWRDGRDRGVPLRTVETARAVNDDMPRHTAAVIADELVKLGRDRNDTTIAVLGAAFKNDTGDVRNTPVRGVVAALRDSGFRVRIFDPLADPAEIVARFGTAPAASLDEAVSGAGCLAFLAGHRQFHELDFGALAERVDEPCLVFDGRMHLPPARIRELHRFGFAYRGIGR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UPG_A_2(3VTF)
?
[Raw transfer]



NAD_A_3(4A7P)
?
[Raw transfer]
5 PsiBlast_PDB 93.7629%-103 - C1 -2Y0E - ? -
31 HHSearch 92.3731%-111 - C1 -3G79 - ? -
36 HHSearch 90.5625%-102 * C1 *2O3J - UGDH_CAEEL -
7 PsiBlast_PDB 90.5427% -95 - C1 -2Y0D - ? -
3 PsiBlast_PDB 90.2731%-108 - C1 -3G79 - ? -
34 HHSearch 90.1828% -95 - C1 -3GG2 - ? -
8 PsiBlast_PDB 89.5727% -91 - C1 -2Y0C - ? -
35 HHSearch 89.2427% -99 - C1 -2Q3E - UGDH_HUMAN -
30 HHSearch 88.8528% -91 - C1 -2Y0C - ? -
6 PsiBlast_PDB 88.3028% -98 - C1 -3GG2 - ? -
32 HHSearch 88.1329%-111 - C1 -3OJO - ? -
12 Fugue 87.2724% -94 - C1 -2O3J - UGDH_CAEEL -
2 PsiBlast_PDB 86.5728%-110 - C1 -3OJO - ? -
37 HHSearch 86.2531% -97 - C1 -3VTF - ? -
1 PsiBlast_PDB 86.1728%-110 - C1 -3OJL - ? -
11 Fugue 86.0226% -94 - C1 -2Q3E - UGDH_HUMAN -
10 PsiBlast_PDB 85.9424% -99 - C1 -4EDF - UGDH_HUMAN -
38 HHSearch 84.3428%-104 - C1 -1MV8 - ALGD_PSEAE -
33 HHSearch 84.3328% -95 - C1 -4A7P - ? -
4 PsiBlast_PDB 84.2729%-100 - C1 -4A7P 8.6 ?


User Run . : Multi Template Modeling Result:

(4 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UPG_A_2(3VTF)
?
[Raw transfer]



NAD_A_3(4A7P)
?
[Raw transfer]
65 100.00100%-126 - C- -M065 - -
54 100.00100%-120 - C- -M054 - -
66 98.81100%-123 - C- -M066 - -
70 93.90100%-115 - C- -M070 - -