@TOME V2.2
(Nov 2016)

Ref. - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : T0819: (2014-06-13 )
MSAFSRFTPLIQSLPASVPFVGPEALERQHGRKIAARIGANESGFGPAPSVLLAIRQAAGDTWKYADPENHDLKQALARHLGTSPANIAIGEGIDGLLGQIVRLVVEAGAPVVTSLGGYPTFNYHVAGHGGRLVTVPYADDREDLEGLLAAVGRENAPLVYLANPDNPMGSWWPAERVVAFAQALPETTLLVLDEAYCETAPRDALPPIESLIDKPNVIRARTFSKAYGLAGARIGYTLSTPGTAQAFDKIRNHFGMSRIGVAAAIAALADQDYLKEVTLKIANSRQRIGRIAADSGLAPLPSATNFVAVDCGKDASYARAIVDRLMSDHGIFIRMPGVAPLNRCIRISTAPDAEMDLLAAALPEVIRSLAAT

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PMP_A_2(1FG7)
HIS8_ECOLI
[Raw transfer]



PMP_A_11(3CQ5)
HIS8_CORGL
[Raw transfer]



PLP_A_3(1IJI)
HIS8_ECOLI
[Raw transfer]
32 HHSearch 92.3028%-100 - C1 -3HDO - HIS8_GEOMG -
28 HHSearch 91.5624%-105 - C1 -3FFH - HIS8_LISIN -
2 PsiBlast_PDB 88.7524%-105 - C1 -3FFH - HIS8_LISIN -
31 HHSearch 84.0626% -99 - C1 -3LY1 - ? -
34 HHSearch 79.4023% -93 - C1 -3CQ5 - HIS8_CORGL -
45 HHSearch 76.6421% -86 - C1 -1B5P - AAT_THET8 -
1 PsiBlast_PDB 75.0429% -89 - C1 -3HDO - HIS8_GEOMG -
33 HHSearch 74.8724% -97 - C1 -3EUC - HIS82_CUPPJ -
30 HHSearch 74.4322% -96 - C1 -1FG7 - HIS8_ECOLI -
36 HHSearch 74.3221% -89 - C1 -1LC5 - COBD_SALTY -
46 HHSearch 73.3922% -89 - C1 -2O1B - ? -
37 HHSearch 72.3226% -92 - C1 -3P1T - ? -
9 Fugue 72.2021% -98 - C1 -1FG7 4.7 HIS8_ECOLI
19 SP3 71.9619% -92 - C1 -1LC5 - COBD_SALTY -
5 PsiBlast_PDB 71.7527% -84 - C1 -3CQ5 5.1 HIS8_CORGL
8 Fugue 70.9321% -92 - C1 -1IJI 5.5 HIS8_ECOLI
18 SP3 70.7219% -88 - C1 -1J32 - ? -
20 SP3 70.2616% -88 - C1 -1O4S - AAT_THEMA -
4 PsiBlast_PDB 68.1426% -87 - C1 -3CQ4 - HIS8_CORGL -
35 HHSearch 67.0518%-101 - C1 -3FTB - ? -


User Run . : Multi Template Modeling Result:

(4 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PMP_A_2(1FG7)
HIS8_ECOLI
[Raw transfer]



PMP_A_11(3CQ5)
HIS8_CORGL
[Raw transfer]



PLP_A_3(1IJI)
HIS8_ECOLI
[Raw transfer]
53 41.05100% -17 - C- -M053 - -
52 38.29100% -14 - C- -M052 - -
51 35.82100% -11 - C- -M051 - -
64 32.25100% 14 - C- -M064 - -