@TOME V2.2
(Nov 2016)
Ref.
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : T0815: (2014-06-11 )
MDLPDIVNMYFDADSCNDTDALSETFAPDAVVEDEGARHQGVVAILRWWVAAKKAASYVAEPLESTVDGDKALVRAKVSGRFPGSPVTLTYSFTIKDGRIARLEIQ
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....----.....10..--.....---.20........30..--.-----.-----.--------.-----..40.......-..50.....--.--..60..-.--...--.-.70--.........80----..--.------.----.-------...--90-.--....-.---...100....---------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MD
L
P
----
D
I
V
N
M
YFDA--DSCND---
T
D
A
L
S
ETFAPDAVVE--D-----E-----G--------A-----R
H
Q
-
G
V
V
A
I
L
R
-
W
W
V
A
A
K
K
A
A
--
S
--
Y
V
A
E
P
L
-
E
--
S
TV--D-G
D
---
K
A
L
V
R
A
K
VSGR----FP--G------S----
P
-------
V
T
L
--
T
--
Y
--
S
F
T
I-K---DG
R
I
A
R
L
E
IQ---------------------
49
HHSearch
83.94
22%
-91
- C2 -
3FGY
2
?
A:
[9-119]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
V
K
D
F
F
A
A
--
M
G
R
G
D
---
K
K
G
L
L
A
V
S
A
E
D
I
E
W
I
--
I
-----
P
-----
G
EWPLA---
G
-----
T
H
R
-
G
H
A
A
L
A
A
-
L
L
Q
K
A
S
E
M
V
--
E
I
-
S
Y
P
E
P
P
-
E
--
F
V
A
--
Q
-
G
E
---
R
V
L
V
V
G
F
A
T
G
R
----
V
K
ST
N
------
R
----
T
-------
F
E
D
--
D
--
W
V
F
A
I
T
V
-
R
---
K
S
K
V
T
S
I
R
E
----------------------
1
PsiBlast_PDB
81.99
28%
-97
- C2 -
3FH1
2
?
A:
[21-120]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
M
R
R
F
N
D
V
--
F
Q
L
H
D
---
P
A
A
L
P
E
L
I
A
E
E
C
V
I
E
--
N
TVPAP
D
-----
G
--------
A
-----
R
H
A
-
G
R
Q
A
C
V
Q
-
L
W
S
A
I
A
T
Q
P
--
G
--
T
R
F
D
L
E
-
E
--
T
F
V
--
A
-
G
D
---
R
A
T
I
R
W
R
Y
W
-
M
----
A
D
--
G
------
N
----
S
-------
V
R
G
--
V
--
N
--
L
M
R
V
-
Q
---
D
G
R
I
---------------------------
36
HHSearch
80.21
21%
-98
- C2 -
2K54
-
?
A:
[6-111]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
----
L
P
V
Q
K
Q
L
E
A
--
Y
N
A
R
D
---
I
D
A
F
M
A
W
W
A
D
D
C
Q
Y
Y
--
A
-----
F
-----
P
--------
A
TL---
L
A
G
-
N
A
A
E
I
R
V
-
R
H
I
E
R
F
K
E
P
--
D
--
L
Y
G
E
L
L
-
T
--
R
V
I
--
V
-
G
N
---
V
V
I
D
H
E
T
V
T
R
N
----
F
P
--
E
------
G
KG--
E
-------
V
D
V
--
A
--
C
--
I
Y
E
V
-
E
---
N
G
R
I
A
K
A
W
F
----------------------
50
HHSearch
78.43
28%
-80
- C2 -
3FH1
2
?
A:
[21-124]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
M
R
R
F
N
D
V
--
F
Q
L
H
D
---
P
A
A
L
P
E
L
I
A
E
E
C
V
I
E
--
N
-----
T
VPAPD
G
--------
A
-----
R
H
A
-
G
R
Q
A
C
V
Q
-
L
W
S
A
-
I
A
T
Q
--
P
G-
T
R
F
D
L
E
-
E
--
T
F
V
--
A
-
G
D
---
R
A
T
I
R
W
R
Y
W
M
---------
A
------
D
----
G
-------
N
S
V
--
R
--
G
V
N
L
M
R
V
-
Q
---
D
G
R
I
V
E
A
M
-----------------------
25
SP3
77.41
20%
-90
- C2 -
1SJW
1
?
A:
[2-143]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
R
Q
T
----
E
I
V
R
R
M
V
S
A
--
F
N
T
G
R
---
T
D
D
V
D
E
Y
I
H
P
D
Y
L
N
P
--
A
TL---
E
-----
H
--------
G
-----
I
H
T
-
G
P
K
A
F
A
Q
-
L
V
G
W
V
R
A
T
F
SE
E
--
A
R
L
E
E
V
-
R
--
I
E
E
--
R
-
G
P
---
W
V
K
A
Y
L
V
L
Y
G
R
HVGR
L
V
--
G
------
M
----
P
PTD
R
R
F
S
G
E
Q
--
V
--
H
--
L
M
R
I
-
V
---
D
G
K
I
R
D
H
R
D
W
P
D
F
Q
G
T
L
R
Q
L
GD
P
W
P
D
DEGWR
31
HHSearch
75.30
20%
-95
* C2 *
4H3U
-
?
A:
[26-136]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
P
----
E
I
V
T
A
W
A
A
A
--
W
T
G
T
N
---
P
N
A
L
G
T
L
F
A
A
D
G
T
Y
V
--
D
-----
H
-----
A
IG------
A
-----
T
M
T
-
G
R
E
Q
I
S
G
-
W
K
A
R
T
D
A
M
I
--
E
N-
V
H
V
T
I
T
-
K
--
A
Y
R
--
A
-
G
D
---
H
V
T
I
E
A
V
Y
G
G
H
----
I
K
--
G
------
A
----
P
T
P
-----
F
A
V
P
M
A
--
T
--
L
L
R
T
-
R
---
G
E
E
I
T
S
D
Q
D
----------------------
23
SP3
74.91
18%
-75
- C2 -
1TUH
-
?
A:
[26-156]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N
E
A
E
Q
N
A
----
E
T
V
R
R
G
Y
A
A
--
F
N
S
G
D
---
M
K
T
L
T
E
L
F
D
E
N
A
S
W
H
--
T
-----
P
-----
G
--------
R
SRIAG
D
H
K
-
G
R
E
A
I
F
A
-
Q
F
G
R
Y
G
G
E
T
--
G
GT
F
K
A
V
L
L
-
H
--
V
L
K
--
S
D
D
G
---
R
V
I
G
I
H
R
N
T
A
E
----
R
G
--
G
------
K
----
R
L
D
-----
V
G
C
--
C
--
I
--
V
F
E
F
-
K
---
N
G
R
V
I
D
G
R
E
H
F
YD
L
Y
A
W
D
E
F
W
R---------
20
Fugue
74.66
18%
-93
- C2 -
2K54
-
?
A:
[1-123]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MN
S
E
I
E
----
L
P
V
Q
K
Q
L
E
A
--
Y
N
A
R
D
---
I
D
A
F
M
A
W
W
A
D
D
C
Q
Y
Y
A
F
P
-----
A
-----
T
--------
L
-----
L
A
G
-
N
A
A
E
I
R
V
-
R
H
I
E
R
F
K
E
P
--
D
--
L
Y
G
E
L
L
-
T
--
R
V
I
--
V
-
G
N
---
V
V
I
D
H
E
T
V
T
R
N
----
F
P
--
E
------
G
----
K
G
E
-----
V
D
V
--
A
--
C
--
I
Y
E
V
-
E
---
N
G
R
I
A
K
A
W
F
K
I
G
E
P
R
I
VSQKS----------
24
SP3
72.48
20%
-97
- C2 -
1M98
2
OCP_ARTMA
A:
[2-317]
PFT
I
D
T
A
R
S
IFPETLAAD
V
V
P
A
T
I
A
R
F
K
Q
LS
A
E
D
Q
L
A
L
I
W
F
A
Y
L
E
M
G
K
T
I
T
I
A
APG
A
A
N
M
Q
F
A
E
N
T
L
Q
E
I
R
Q
MT
P
L
Q
Q
T
Q
A
M
C
D
L
A
N
RTDT
P
I
C
R
T
Y
A
S
WS
P
N
I
K
L
G
F
W
Y
E
L
G
R
F
M
D
Q
GLVAPIPEGYKLS
A
N
A
N
A
I
L
V
T
I
Q
G
ID
P
G
Q
Q
I
T
V
L
R
N
C
V
V
D
MGFDTSKLG
S
Y
Q
R
V
A
E
P
VVPPQEMSQ
R
T
K
V
Q
I
E
GVTN
S
T
V
L
Q
Y
M
D
N
--
L
N
A
N
D
---
F
D
N
L
I
S
L
F
A
E
D
G
A
L
Q
--
P
-----
P
-----
F
--------
Q
-----
K
P
I
V
G
K
E
N
T
L
R
-
F
F
R
E
E
C
Q
N
L
--
K
--
L
I
P
E
R
G
-
V
--
S
E
P
--
T
-
E
D
G
Y
T
Q
I
K
V
T
G
K
V
Q
T
P
----
W
F
--
G
------
G
----
N
V
G
-----
M
N
I
--
A
--
W
--
R
F
L
L
-
N
P--
E
N
K
V
F
F
V
A
I
D
L
L
ASPKELLNL----------
35
HHSearch
70.95
23%
-75
- C2 -
1OHP
1
SDIS_COMTE
A:
[8-114]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
----
A
V
V
Q
R
Y
V
A
A
--
L
N
A
G
D
---
L
D
G
I
V
A
L
F
A
D
D
A
T
V
E
--
N
-----
P
VG---
S
--------
E
-----
P
R
S
-
G
T
A
A
I
R
E
-
F
Y
A
N
S
L
K
L
---
P
--
L
A
V
E
L
T
Q
E
--
V
R
A
--
V
-
A
N
---
E
A
A
F
A
F
I
V
S
F
E
----
Y
Q
--
G
------
R
----
K
-------
T
V
V
--
A
P
I
D
--
H
F
R
F
N
G
---
A
G
K
V
V
S
M
R
A
----------------------
42
HHSearch
69.73
24%
-83
- C2 -
3ER7
1
?
A:
[6-118]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
L
D
R
Y
F
D
L
F
D
A
S
R
T
D
E
K
A
F
D
D
L
I
S
L
F
S
D
E
I
T
F
V
--
L
-----
N
-----
G
--------
Q
-----
E
Q
H
-
G
I
D
A
W
K
Q
-
F
V
R
M
V
F
T
A
N
--
Q
D
-
I
K
H
M
Y
A
-
G
--
W
V
P
S
E
T
-
G
D
---
T
M
E
T
R
W
A
V
C
G
K
----
S
A
D-
G
------
S
----
V
-------
F
T
Q
--
D
G
T
D
--
I
A
R
L
-
N
A--
D
G
K
I
V
Y
L
A
N
----------------------
21
SP3
67.69
18%
-73
- C2 -
1QJG
1
SDIS_COMTE
A:
[1-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNT
P
E
H
M
T
----
A
V
V
Q
R
Y
V
A
A
--
L
N
A
G
D
---
L
D
G
I
V
A
L
F
A
D
D
A
T
V
E
--
N
-----
P
VG---
S
--------
E
-----
P
R
S
-
G
T
A
A
I
R
E
-
F
Y
A
N
S
-
L
K
L
--
P
--
L
A
V
E
L
T
-
Q
E
-
V
R
A
--
V
-
A
N
---
E
A
A
F
A
F
I
V
S
F
E
----
Y
Q
--
G
------
R
----
K
-------
T
V
V
--
A
--
P
--
I
D
H
F
-
R
F
N
G
A
G
K
V
V
S
M
R
A
L
F
G
EKNIHAGA-----------
18
Fugue
66.38
18%
-73
- C2 -
1TUH
-
?
A:
[26-156]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N
E
A
E
Q
N
A
----
E
T
V
R
R
G
Y
A
A
--
F
N
S
G
D
---
M
K
T
L
T
E
L
F
D
E
N
A
S
W
H
--
T
-----
P
-----
G
--------
R
SRIAG
D
H
K
-
G
R
E
A
I
F
A
-
Q
F
G
R
Y
G
G
E
T
G
-
G
--
T
F
K
A
V
L
-
L
--
H
V
L
--
K
-
S
D
---
D
G
R
V
I
G
I
H
R
N
T
----
A
E
--
R
------
G
G
K
R
L
D
-------
V
G
C
--
C
--
I
--
V
F
E
F
-
K
---
N
G
R
V
I
D
G
R
E
H
F
YD
L
Y
A
W
D
E
F
W
R---------
47
HHSearch
65.06
18%
-81
- C2 -
3EC9
-
?
A:
[15-127]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
----
Q
I
V
A
D
H
Y
A
A
--
S
D
R
H
D
---
P
A
A
M
M
A
D
I
A
P
A
I
E
W
T
--
E
-----
M
-----
A
GFPC
A
---
G
-----
T
Y
R
-
S
A
D
E
I
V
R
N
V
F
R
R
L
G
E
E
W
D-
G
--
Y
T
F
K
L
D
-
A
--
L
H
D
--
A
-
G
D
---
T
V
I
G
V
G
R
Y
S
G
T
----
Y
R
RT
G
------
K
----
S
-------
F
E
C
--
R
--
V
A
H
V
W
R
V
-
D
---
A
G
K
I
V
H
F
E
Q
----------------------
39
HHSearch
63.58
17%
-74
- C2 -
3EBT
2
?
A:
[7-119]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
V
R
E
S
Y
E
A
--
F
H
R
R
D
---
L
P
G
V
L
A
A
L
A
P
D
V
R
W
T
--
H
-----
P
-----
D
GMSPYGLG
G
-----
T
K
H
-
G
H
D
E
V
I
A
-
F
I
R
H
V
P
T
H
I
--
A
E
-
M
R
L
A
P
D
-
E
--
F
I
E
--
S
-
G
E
---
R
I
V
V
L
G
T
R
R
V
T
A
---
V
N
--
G
------
R
----
S
-------
A
T
L
--
K
--
F
V
H
V
W
R
F
-
E
---
N
G
R
A
V
T
F
E
D
----------------------
41
HHSearch
63.28
19%
-81
- C2 -
2BNG
-
EPHG_MYCTU
A:
[19-122]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
V
E
A
F
L
N
A
--
L
Q
N
E
D
---
F
D
T
V
D
A
A
L
G
D
D
L
V
Y
E
--
N
-----
V
-----
G
F
-------
S
-----
R
I
R
-
G
G
R
R
T
A
T
-
L
L
R
R
M
Q
G
R
V
--
G
--
F
E
V
K
I
H
-
R
--
I
G
A
--
D
-
G
A
---
A
V
L
T
E
R
T
D
A
L
I
----
I
G
--
P
------
L
----
R
-------
V
Q
F
W
V
C
--
G
--
V
F
E
V
-
D
---
D
G
R
I
T
L
W
R
D
----------------------
37
HHSearch
63.15
18%
-62
- C2 -
4MJD
-
?
A:
[6-108]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
----
A
T
A
R
A
Y
Y
R
A
--
L
D
E
H
D
---
Y
D
L
L
S
D
V
L
A
P
D
F
V
H
D
--
R
-----
P
-----
D
--------
R
-----
T
I
E
-
G
R
E
R
F
V
R
-
F
M
R
E
E
R
P
Q
T
--
D
--
T
S
H
P
I
A
-
T
--
I
Y
T
--
G
-
A
S
---
T
V
A
V
E
G
R
L
L
N
------
S
--
D
------
G
----
A
-------
E
I
T
--
Q
--
F
V
D
V
F
A
F
-
E
---
D
G
V
I
G
R
I
R
T
----------------------
22
SP3
62.33
16%
-67
- C2 -
1EA2
-
SDIS_PSEPU
A:
[2-127]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NLPT
A
Q
E
V
Q
----
G
L
M
A
R
F
I
E
L
--
V
D
V
G
D
---
I
E
A
I
V
Q
M
Y
A
D
D
A
T
V
E
--
D
PF---
G
-----
Q
--------
P
-----
P
I
H
-
G
R
E
Q
I
A
A
-
F
Y
R
Q
G
---
L
--
K
--
V
R
A
C
L
T
-
G
P
V
R
A
S
--
H
-
N
G
---
C
G
A
M
P
F
R
V
E
M
V
----
W
N
--
G
------
Q
----
P
-------
C
A
L
--
D
--
V
--
I
D
V
M
-
R
F
D
E
H
G
R
I
Q
T
M
Q
A
Y
W
S
EVNLSV-------------
46
HHSearch
62.30
16%
-83
- C2 -
3K0Z
1
?
A:
[38-142]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
A
A
Q
R
F
Y
A
F
--
W
D
T
G
K
---
E
E
L
I
P
Q
T
V
T
E
N
F
F
D
H
--
T
-----
L
P----
K
--------
G
-----
R
P
Q
-
G
T
E
G
L
K
F
-
A
A
Q
N
F
R
K
I
V
P-
N
--
I
H
C
E
I
E
-
D
--
L
L
V
--
V
-
G
D
---
K
V
T
A
R
L
S
F
T
G
T
----
H
N
--
D
------
K
----
K
-------
I
D
F
--
F
A
I
D
--
I
L
H
V
-
K
---
D
G
K
I
T
E
D
W
H
----------------------
32
HHSearch
61.65
17%
-74
- C2 -
3FF2
-
?
A:
[2-114]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
N
L
----
E
T
A
K
A
M
I
A
A
--
Y
N
A
Q
D
---
V
D
T
Y
V
S
Y
M
T
D
D
A
C
E
A
--
N
-----
Y
RG---
D
--------
V
-----
V
R
E
-
G
K
E
G
T
R
S
-
G
L
A
A
A
F
A
R
W
P
-
Q
--
N
H
A
E
I
K
-
D
--
A
Q
Q
--
V
-
G
T
---
Y
V
L
M
R
E
H
V
T
R
G
----
P
A
--
T
DGSPLV
E
----
P
-------
F
D
V
--
V
--
A
--
V
Y
S
F
-
E
---
G
D
K
C
S
R
V
E
-----------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90........100....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MD
L
P
D
I
V
N
M
YFDADSCND
T
D
A
L
S
ETFAPDAVVEDEGAR
H
Q
G
V
V
A
I
L
R
W
W
V
A
A
K
K
A
A
S
Y
V
A
E
P
L
E
S
TVDG
D
K
A
L
V
R
A
K
VSGRFPGS
P
V
T
L
T
Y
S
F
T
IKDG
R
I
A
R
L
E
IQ
71
96.43
100%
-105
- C- -
M071
-
A:
[1-149]
M
D
L
P
D
I
V
N
M
Y
F
D
A
D
S
C
N
D
T
D
A
L
S
E
T
F
A
P
D
A
V
V
E
D
E
G
A
R
H
Q
G
V
V
A
I
L
R
W
W
V
A
A
K
K
A
A
S
Y
V
A
E
P
L
E
S
T
V
D
G
D
K
A
L
V
R
A
K
V
S
G
R
F
P
G
S
P
V
T
L
T
Y
S
F
T
I
K
D
G
R
I
A
R
L
E
I
Q
65
38.18
100%
2
- C- -
M065
-
A:
[2-128]
M
D
L
P
D
I
V
N
M
Y
F
D
A
D
S
C
N
D
T
D
A
L
S
E
T
F
A
P
D
A
V
V
E
D
E
G
A
R
H
Q
G
V
V
A
I
L
R
W
W
V
A
A
K
K
A
A
S
Y
V
A
E
P
L
E
S
T
V
D
G
D
K
A
L
V
R
A
K
V
S
G
R
F
P
G
S
P
V
T
L
T
Y
S
F
T
I
K
D
G
R
I
A
R
L
E
I
Q
53
34.91
100%
6
- C- -
M053
-
A:
[5-127]
M
D
L
P
D
I
V
N
M
Y
F
D
A
D
S
C
N
D
T
D
A
L
S
E
T
F
A
P
D
A
V
V
E
D
E
G
A
R
H
Q
G
V
V
A
I
L
R
W
W
V
A
A
K
K
A
A
S
Y
V
A
E
P
L
E
S
T
V
D
G
D
K
A
L
V
R
A
K
V
S
G
R
F
P
G
S
P
V
T
L
T
Y
S
F
T
I
K
D
G
R
I
A
R
L
E
I
Q
64
33.19
100%
9
- C- -
M064
-
A:
[2-124]
M
D
L
P
D
I
V
N
M
Y
F
D
A
D
S
C
N
D
T
D
A
L
S
E
T
F
A
P
D
A
V
V
E
D
E
G
A
R
H
Q
G
V
V
A
I
L
R
W
W
V
A
A
K
K
A
A
S
Y
V
A
E
P
L
E
S
T
V
D
G
D
K
A
L
V
R
A
K
V
S
G
R
F
P
G
S
P
V
T
L
T
Y
S
F
T
I
K
D
G
R
I
A
R
L
E
I
Q